SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene10611

Length: 862 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene10611 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene370	12/12

Source	Descriptions	Term	Type	Identity
AutoFact	P-loop containing nucleoside triphosphate hydrolase-like protein [Arabidopsis thaliana] gb\|AAY25445.1\| At1g72040 [Arabidopsis thaliana] dbj\|BAF00702.1\| hypothetical protein [Arabidopsis thaliana] gb\|AEE35266.1\| P-loop containing nucleoside triphosphate hy	-	-	66%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	76%
Blast2go	deoxycytidine kinase	-	-	82%

Source	ECs	Term	Type	e value	Identity
Blast2go	Deoxycytidine kinase.	EC:2.7.1.74	-	0.0	82%

Source	KEGGs	Term	Type	Identity
Blast2go	Purine metabolism	00230		82%
Blast2go	Pyrimidine metabolism	00240		82%
Blast2go	Metabolic pathways	01100		82%
Blast2go	Transferases, Transferring phosphorous-containing groups, Phosphotransferases with an alcohol group as acceptor.	EC:2.7.1.-	-	82%

Source	KEGGs	Term	Identity
Blast2go	Pentose phosphate pathway	00030	82%
Blast2go	Lipopolysaccharide biosynthesis	00540	82%
Blast2go	Nicotinate and nicotinamide metabolism	00760	82%
Blast2go	Metabolic pathways	01100	82%

Source	GOs	Term	Type	Identity
Blast2go	nucleobase-containing compound metabolic process	GO:0006139	Biological Process	82%
Blast2go	phosphorylation	GO:0016310	Biological Process	82%
Blast2go	deoxycytidine kinase activity	GO:0004137	Molecular Function	82%
Blast2go	phosphotransferase activity, alcohol group as acceptor	GO:0016773	Molecular Function	82%
Blast2go	ATP binding	GO:0005524	Molecular Function	82%
Blast2go	nucleus	GO:0005634	Cellular Component	82%

Source	InterPros	Term	Type	e value	Identity
Sma3	Pyridoxal phosphate-dependent decarboxylase	IPR002129	-	0.0	-
Sma3	Deoxynucleoside kinase	IPR002624	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: F6GYT1

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 157 aas, your sequence is shorter than subject: 287 - 565

Fln protein: M*EDNMSFAAGGGGLHGDKVRLQRRRGTTGQKAVDLQMVPGIGPRNKQKLVQKGIGRVSDLKQLYRDKFLGDGSEKMVEFLRSSIGIIHKNHAESITSYIKESVDEELEEESLQDGERKMQKKRLTFCVEGNISVGKTTFLQRIANETLELRDLVEVVPEPISKWQDIGPDHFNILDAFYAEPQRYAYTFQNYVFVTRVMQERESAGSLKPLRLMERSVFSDRMVFVRAVHEAKWMNGMELSIYDSWFDPVVSVLPGLVPDTFIYLRASPDTCHRRLQLRKREEENI

Protein Length: 288

Fln nts: AATGTAGGAGGATAATATGTCTTTTGCTGCGGGTGGTGGCGGGTTGCATGGTGACAAAGTTCGTCTGCAGAGGCGGAGAGGGACAACAGGGCAAAAAGCGGTAGACCTCCAAATGGTTCCCGGCATTGGGCCTCGTAATAAGCAAAAACTGGTACAGAAGGGTATTGGTCGAGTTTCAGACCTCAAGCAGCTCTACCGAGACAAGTTCCTTGGAGATGGCAGTGAAAAGATGGTTGAATTTCTACGTAGTTCCATTGGGATCATCCACAAGAACCATGCGGAGAGTATAACATCTTACATCAAGGAGAGTGTGGATGAAGAGCTGGAAGAAGAATCCCTGCAGGATGGAGAGAGAAAAATGCAGAAAAAGAGGCTCACATTTTGTGTTGAAGGTAATATTAGTGTTGGGAAAACCACATTTCTACAGAGGATTGCGAATGAGACACTTGAGTTACGTGACCTTGTAGAGGTGGTTCCTGAACCTATTTCTAAGTGGCAAGACATTGGGCCTGATCATTTCAATATATTGGATGCTTTCTATGCTGAACCTCAACGGTATGCCTACACATTTCAGAATTATGTTTTTGTAACGAGGGTGATGCAAGAGCGAGAGTCTGCAGGTAGCTTAAAGCCTCTACGACTCATGGAAAGAAGTGTTTTCAGTGATCGGATGGTGTTTGTGCGAGCTGTTCATGAGGCAAAGTGGATGAATGGGATGGAGCTTAGCATCTATGATTCATGGTTTGATCCAGTTGTTTCTGTTTTACCTGGGCTTGTTCCTGATACATTTATTTACTTGAGGGCCAGTCCAGACACATGCCATAGACGTTTGCAGTTACGAAAGAGAGAAGAAGAAAACATT

Fln Alignment:

Contig10611___GGGGLHGDKVRLQRR-RGTTGQKA------VDLQMVPGIGPRNKQKLVQKGIGRVSDLKQLYRDKFLGDGSEKMVEFLRSSIGIIHKNHAESITSYIKXXXXXXXXXXXXXXXERKMQKKRLTFCVEGNISVGKTTFLQRIANETLELRDLVEVVPEPISKWQDIGPDHFNILDAFYAEPQRYAYTFQNYVFVTRVMQERESAGSLKPLRLMERSVFSDRMVFVRAVHEAKWMNGMELSIYDSWFDPVVSVLPGLVPDTFIYLRASPDTCHRRLQLRKREEE
F6GYT1__________________GEKGSDEKPLRLQRRQRGSSSLNSGAVAANVDLLTIPGVGPRNLRKLVDKGIGGVAELKQLYKDKFFGESSQKMVEFLRSSVGIIHRNHAESITTFIKESVDEELKDNSDSDA-KPTQKKRLTFCVEGNISVGKTTFLQRIANETLELRDLVEIVPEPINKWQDVGPDHFNILDAFYAEPQRYAYTFQNYVFVTRVMQERESSGGVKPLRLMERSVFSDRMVFVRAVHEANWMNEMEISIYDSWFDPVVSCLPGLIPDGFIYLRATPDTCHKRMKLRKRNEE

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
301	25		75		0.996473
302	25		75		0.996473
303		75		25	0.996473
304	75		25		0.996473
443	75	25			0.996473
445	75			25	0.996473
493	33			66	0.997452
494	33	33			0.997753
530	25			75	0.996473
532		75	25		0.996473
776		25		75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain