SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene10536

Length: 1405 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene10536 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene3413	28/28

Source	Descriptions	Term	Type	Identity
AutoFact	Protein phosphatase 2c, putative n=1 Tax=Ricinus communis RepID=B9RL74_RICCO	-	-	68%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Blast2go	protein phosphatase	-	-	80%

Source	GOs	Term	Type	Identity
Blast2go	metabolic process	GO:0008152	Biological Process	80%
Blast2go	protein serine/threonine phosphatase activity	GO:0004722	Molecular Function	80%
Blast2go	plastid	GO:0009536	Cellular Component	80%

Source	InterPros	Term	Type	Identity
Sma3	Protein phosphatase 2C, manganese/magnesium aspartate binding site	IPR000222	-	-
Sma3	Small GTPase superfamily	IPR001806	-	-
Sma3	Protein phosphatase 2C-like	IPR001932	-	-
Sma3	RNA polymerase sigma factor 54, interaction	IPR002078	-	-
Sma3	Small GTPase superfamily, Rab type	IPR003579	-	-
Sma3	Small GTP-binding protein domain	IPR005225	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3		IPR013753	-	-
Sma3		IPR014045	-	-
Sma3	Protein phosphatase 2C	IPR015655	-	-
Sma3	DNA-directed DNA polymerase, family B, conserved site	IPR017964	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A7X5

Fln msg: atg_distance in limit (1-15): atg_distance = 8,

Fln protein: MSMASSKPKGKMEFFTRIKMAAGFTPSSSDTGKGRCKLPNNKVMHGFHLVKGKTRHDMEDYHVAEYRHVEDHDLGLFAIFDGHLGHGVPCYLQSNLFDNILNEPKFWTDPESAIKNAYNRTDGKILAKAADLGPGGSTAVTAILVDGKKLFVANIGDSRAVICKNGNAIQLTVDHEPSIERQNIEKKGGFVTLLPGDVPRVNGQLAVARAFGDRSLKQHLSSEPDVRDTTIDATTEFLILASDGLWKVMKNQEAVDLVRKIKDPQVAAKCLTENAVARKSKDDISCIVVRFQQ*

Protein Length: 295

Fln nts: A_-_ATGTCCATGGCATCCTCTAAGCCTAAAGGAAAGATGGAGTTCTTCACTAGGATTAAGATGGCAGCTGGCTTCACTCCATCCTCATCTGATACAGGAAAAGGACGTTGCAAGTTACCAAACAATAAAGTAATGCATGGATTTCATTTAGTGAAGGGTAAAACAAGGCATGATATGGAGGACTACCATGTCGCAGAGTATAGGCATGTAGAAGATCATGATTTGGGGCTTTTTGCTATCTTTGACGGACATTTGGGACATGGCGTCCCATGTTACTTGCAATCAAATCTTTTTGACAACATTTTAAATGAGCCGAAGTTCTGGACAGACCCAGAAAGTGCCATCAAGAATGCATACAACCGGACTGATGGGAAAATCTTAGCAAAGGCAGCTGATTTAGGGCCCGGTGGCTCCACAGCAGTCACTGCTATTTTAGTTGATGGGAAAAAACTCTTTGTAGCAAATATAGGGGATTCCAGGGCTGTTATATGTAAAAATGGCAATGCTATTCAGCTGACTGTTGATCATGAGCCAAGTATTGAACGCCAAAACATCGAGAAGAAGGGTGGATTTGTGACACTCCTGCCAGGAGATGTACCTCGAGTTAATGGTCAGCTTGCTGTAGCTCGTGCGTTTGGTGACAGGAGCCTGAAGCAACATTTAAGTTCAGAACCAGATGTGAGAGACACAACCATAGATGCAACCACAGAATTTCTCATTTTGGCTAGTGATGGATTGTGGAAGGTCATGAAAAATCAAGAGGCTGTTGATTTGGTTAGAAAAATCAAGGACCCTCAGGTGGCAGCCAAGTGTCTGACTGAAAATGCAGTTGCAAGAAAGAGCAAAGATGATATTTCATGCATTGTTGTGCGCTTCCAGCAGTAA___AAATGGATTTACATTTGTACCAGTGATTGGATGCAGAAATTTTCCAGAAACAGTTCGTAGATTGGTCGAACCTTCCCCTCAGTATTTTTTGGTTGAATTCCAAGCAGCATCCAATATTATAAGTATTTTCACCTTCTGCTGCTACTTTTGCTGTACCTAGTACGAAGATTCCCCGCACTTTATAAACTACAAACGGGATGGCTAGTTTCACTTTCAAAGCCATTGAGAATTTGTTTGCTTAAATATAATTATCTTGTCATGCTTTACAGAAACATCACTGAGACATGAAAACTCAGTGAATGACCAATGGACTCTTTTGTGTTGGTGATCGTGCTACGATCAGCAATATCAAGAACTCTATTAAACCAAAGTGCCCCCTCCAGGCTCTGTACATGCTTCATGGCTGAAGCCTATATAAATATCTTAGAAATAATGGACTTCAAACCATTGCATTGGTTTCAAAATACCATGTTACTGCAGTTGTTGAAACAGTAATATTTATTTGATAGAAATAATGACATT

Fln Alignment:

Contig10536___SMASSKPKGKMEFFTRIKMAAGFTPSSSDTGKGRCKLPNNKVMHGFHLVKGKTRHDMEDYHVAEYRHVEDHDLGLFAIFDGHLGHGVPCYLQSNLFDNILNEPKFWTDPESAIKNAYNRTDGKILAKAADLGPGGSTAVTAILVDGKKLFVANIGDSRAVICKNGNAIQLTVDHEPSIERQNIEKKGGFVTLLPGDVPRVNGQLAVARAFGDRSLKQHLSSEPDVRDTTIDATTEFLILASDGLWKVMKNQEAVDLVRKIKDPQVAAKCLTENAVARKSKDDISCIVVRFQQ
D5A7X5__________________SMASSKAKGKKEFFTRIKMAAGFTPSSSDTGKGRCKLPNNKVIHGFHLVKGKTRHDMEDYHVAEYRHLKDHDLGLFAIFDGHLGHGVPCYLQSNLFDNILNEPKFWTDPVGAIKNAYNWTDGKILAKAADLGPGGSTAVTAILVDGKKLFVANIGDSRAVICKSGTAIQLTVDHEPSIERQTIEKKGGFVTLLPGDVPRVNGQLAVARAFGDRSLKQHLSSEPDVRDTSIDATIEFLILASDGLWKVMKNQEAVDLVRKIKDPQVAAKCLTENAVARKSKDDISCIVVRFQQ

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
382		33		66	0.997452
476	12			87	0.992554
477	12			87	0.992554
479		87	12		0.992554
658	16			83	0.994512
1265	20			80	0.995493
1266	80	20			0.995493
1268	80			20	0.995493
1296	25			75	0.996473
1297		25	75		0.996473
1298	25		75		0.996473
1300	75			25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain