SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene10481

Length: 485 nt

UniGene Fasta

>biog3_v1.0_unigene10481
AATGTCCAATAAGTGAAGTTGAGAACATGGAGAACAATTCTATGGCAGATGTCATTGGTGTTGTATCTTAATCAATCCATCGAGTATAATAATGAGAAAAATGGCACAGAGACTCAGAAAAGGTCTCTTCAGCTGAAGGACATGTCAGGTCGCAGTGTGGAGCTCACTATGTGGGGTGCCTTCTGCAATAAGGAGGGTCAGCAGATTCAAGAGCTATGTGATTCTGGATCCTTCCCCATCCTGGCTGTGAAAGCTGGACGGATTAGTGATTTTAGTGGGAAATCTGTGGGTACAATTTCCACAACCCAACTTGTTATAAACCCAGACCTTCCAGAGGCTCATCGATTGAGAGACTGGTTTGAGAGAGAGGGGAAGAGCACTGCTTCTCAGTCTATTACTAGAGAATTGACATCCGGTGGAAGAGTGGAAATGCGTAAGATGGTTTCTCAAATTAAGGATGAAGGACTTGGTAGATCTGAGACATT

Ace file of the UniGene biog3_v1.0_unigene10481

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene27923	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	RPA 70kDa subunit [Pisum sativum]	-	-	63%
FL-Next	tr=Replication factor A 1, rfa1, putative; Ricinus communis (Castor bean).	-	-	71%
Blast2go	replication factor a1	-	-	77%

Source	GOs	Term	Type	Identity
Blast2go	male meiosis I	GO:0007141	Biological Process	77%
Blast2go	chiasma assembly	GO:0051026	Biological Process	77%
Blast2go	male gamete generation	GO:0048232	Biological Process	77%
Blast2go	pollen development	GO:0009555	Biological Process	77%
Blast2go	reciprocal meiotic recombination	GO:0007131	Biological Process	77%
Blast2go	nuclear chromatin	GO:0000790	Cellular Component	77%

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Nucleic acid binding, OB-fold, tRNA/helicase-type	IPR004365	-	-
Sma3	Replication factor-a protein 1 Rpa1	IPR004591	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	Replication factor-A protein 1, N-terminal	IPR007199	-	-
Sma3	Nucleic acid-binding, OB-fold	IPR012340	-	-
Sma3		IPR013084	-	-
Sma3	Replication factor A, C-terminal	IPR013955	-	-
Sma3	APOBEC/CMP deaminase, zinc-binding	IPR016192	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B9S1L9

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 336 aas, your sequence is shorter than subject: 161 - 901

Fln protein: NVQ*VKLRTWRTILWQMSLVLYLNQSIEYNNEKNGTETQKRSLQLKDMSGRSVELTMWGAFCNKEGQQIQELCDSGSFPILAVKAGRISDFSGKSVGTISTTQLVINPDLPEAHRLRDWFEREGKSTASQSITRELTSGGRVEMRKMVSQIKDEGLGRSET

Protein Length: 162

Fln nts: AATGTCCAATAAGTGAAGTTGAGAACATGGAGAACAATTCTATGGCAGATGTCATTGGTGTTGTATCTTAATCAATCCATCGAGTATAATAATGAGAAAAATGGCACAGAGACTCAGAAAAGGTCTCTTCAGCTGAAGGACATGTCAGGTCGCAGTGTGGAGCTCACTATGTGGGGTGCCTTCTGCAATAAGGAGGGTCAGCAGATTCAAGAGCTATGTGATTCTGGATCCTTCCCCATCCTGGCTGTGAAAGCTGGACGGATTAGTGATTTTAGTGGGAAATCTGTGGGTACAATTTCCACAACCCAACTTGTTATAAACCCAGACCTTCCAGAGGCTCATCGATTGAGAGACTGGTTTGAGAGAGAGGGGAAGAGCACTGCTTCTCAGTCTATTACTAGAGAATTGACATCCGGTGGAAGAGTGGAAATGCGTAAGATGGTTTCTCAAATTAAGGATGAAGGACTTGGTAGATCTGAGACATT

Fln Alignment:

Contig10481___KNGTETQKRSLQLKDMSGRSVELTMWGAFCNKEGQQIQELCDSGSFPILAVKAGRISDFSGKSVGTISTTQLVINPDLPEAHRLRDWFEREGKSTASQSITRELTSGGRVEMRKMVSQIKDEGLGRSE
B9S1L9__________________KNGTETQKRTLQLKDNSGRSVELTLWGNFCNAEGQRLQNMCDSGGFPVLAVKSGRVSDFNGKAVGTISTSQLFIEPDIPEARRLKEWFEKEGRNTPSVSISRELSSVGRSEIHKTISQIKDEKLGTSE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain