SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene10406

Length: 494 nt

UniGene Fasta

>biog3_v1.0_unigene10406
CAGATGCTGGAAGTTACAATACAGTCTCTATCTGAAACTATATCCAGTCTTAAGGAGAAGATTGCAGCAGAGGTTGCCTTACCTGCAAACAAACAAAAACTTAGTGGACGGGCAGGTTTTCTCAAGGACAACCTATCACTTGCATATTATAACATAGGGCCTGGAGAAACATTGACGTTGGCCCTGAGAGAACGTGGTGGTAGAAAACGATAGGCATGTAATTGACCACTGACATGATGTCAGAATAAAATTGATGATCGTGTCCGTAAGTTCTTTCGTTTATATTTATAATGTCCTGTAGGAAGCTTCATCTCTGGGCTTATTGAAAGCTTATGTTCTTTTTGACAAATTATGGAGAATATCTGCGAAGGTATCTTTGGTGAATGTTTTGTAATCATATCCCTTTACCTTTATAATGTCGTATAGAAAGCTTTGATTCTCTGGGCTCATTGAAGGCGTACTTGCTTTTTGATAAATTGCGGAGAATATTTTAG

Ace file of the UniGene biog3_v1.0_unigene10406

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene21288	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	splicing factor 3A subunit 1 [Arabidopsis thaliana] ref\|NP_001117289.1\| splicing factor 3A subunit 1 [Arabidopsis thaliana] sp\|Q8RXF1.2\|SF3A1_ARATH RecName: Full=Probable splicing factor 3A subunit 1 dbj\|BAE98583.1\| putative splicing factor [Arabidopsis t	-	-	63%
FL-Next	sp=Probable splicing factor 3A subunit 1; Arabidopsis thaliana (Mouse-ear cress).	-	-	74%
Blast2go	probable splicing factor 3a subunit 1-like	-	-	79%

Source	InterPros	Term	Type	Identity
Sma3	SWAP/Surp	IPR000061	-	-
Sma3	Glutamine amidotransferase, class-II	IPR000583	-	-
Sma3	ROK	IPR000600	-	-
Sma3	Ubiquitin	IPR000626	-	-
Sma3	Glycoside hydrolase, family 19, catalytic	IPR000726	-	-
Sma3	Sterol-sensing domain	IPR000731	-	-
Sma3	Flavodoxin, conserved site	IPR001226	-	-
Sma3	Myosin head, motor domain	IPR001609	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Protein phosphatase 2C-like	IPR001932	-	-
Sma3	Thiolase	IPR002155	-	-
Sma3	Cell surface receptor IPT/TIG	IPR002909	-	-
Sma3	Actin-binding FH2/DRF autoregulatory	IPR003104	-	-
Sma3	Patched	IPR003392	-	-
Sma3	Pistil-specific extensin-like protein	IPR003882	-	-
Sma3	Outer membrane autotransporter barrel	IPR006315	-	-
Sma3	Parallel beta-helix repeat	IPR006626	-	-
Sma3	Extensin repeat	IPR006706	-	-
Sma3	Peptidase M11, gametolysin	IPR008752	-	-
Sma3	Exocyst complex component Sec10	IPR009976	-	-
Sma3	Glycine rich protein	IPR010800	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	Peptidase M10B, serralysin, C-terminal	IPR013858	-	-
Sma3	Tensin phosphatase, C2 domain	IPR014020	-	-
Sma3	Domain of unknown function DUF1929	IPR015202	-	-
Sma3	Actin-binding FH2	IPR015425	-	-
Sma3	Galactose oxidase, beta-propeller	IPR015916	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3	EF-HAND 2	IPR018249	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: Q8RXF1

Fln msg: your sequence is shorter than subject: 71 - 785

Fln protein: QMLEVTIQSLSETISSLKEKIAAEVALPANKQKLSGRAGFLKDNLSLAYYNIGPGETLTLALRERGGRKR*

Protein Length: 72

Fln nts: CAGATGCTGGAAGTTACAATACAGTCTCTATCTGAAACTATATCCAGTCTTAAGGAGAAGATTGCAGCAGAGGTTGCCTTACCTGCAAACAAACAAAAACTTAGTGGACGGGCAGGTTTTCTCAAGGACAACCTATCACTTGCATATTATAACATAGGGCCTGGAGAAACATTGACGTTGGCCCTGAGAGAACGTGGTGGTAGAAAACGATAG___GCATGTAATTGACCACTGACATGATGTCAGAATAAAATTGATGATCGTGTCCGTAAGTTCTTTCGTTTATATTTATAATGTCCTGTAGGAAGCTTCATCTCTGGGCTTATTGAAAGCTTATGTTCTTTTTGACAAATTATGGAGAATATCTGCGAAGGTATCTTTGGTGAATGTTTTGTAATCATATCCCTTTACCTTTATAATGTCGTATAGAAAGCTTTGATTCTCTGGGCTCATTGAAGGCGTACTTGCTTTTTGATAAATTGCGGAGAATATTTTAG

Fln Alignment:

Contig10406___QMLEVTIQSLSETISSLKEKIAAEVALPANKQKLSGRAGFLKDNLSLAYYNIGPGETLTLALRERGGRKR
Q8RXF1__________________QFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSGKAGFLKDNMSLAHYNVGAGEILTLSLRERGGRKR

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
139	33	66			0.997452
141			33	66	0.997452
142			66	33	0.997452
236			66	33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain