SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene10360

Length: 978 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene10360

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene15632	3/166
SustainPine v2.0	sp_v2.0_unigene22269	1/166
SustainPine v2.0	sp_v2.0_unigene23741	117/166
SustainPine v2.0	sp_v2.0_unigene24288	10/166
SustainPine v2.0	sp_v2.0_unigene60282	29/166
SustainPine v2.0	sp_v2.0_unigene60308	1/166

Source	Descriptions	Term	Type	Identity
AutoFact	Ribulose bisphosphate carboxylase small chain, chloroplastic n=1 Tax=Pinus thunbergii RepID=RBS_PINTH	-	-	96%
FL-Next	sp=Ribulose bisphosphate carboxylase small chain, chloroplastic; Pinus thunbergii (Japanese black pine) (Pinus thunbergiana).	-	-	96%
Blast2go	ribulose bisphosphate small subunit	-	-	90%

Source	GOs	Term	Type	Identity
Blast2go	response to red light	GO:0010114	Biological Process	90%
Blast2go	response to cold	GO:0009409	Biological Process	90%
Blast2go	response to blue light	GO:0009637	Biological Process	90%
Blast2go	metabolic process	GO:0008152	Biological Process	90%
Blast2go	response to far red light	GO:0010218	Biological Process	90%
Blast2go	copper ion binding	GO:0005507	Molecular Function	90%
Blast2go	thylakoid lumen	GO:0031977	Cellular Component	90%
Blast2go	chloroplast envelope	GO:0009941	Cellular Component	90%
Blast2go	chloroplast thylakoid membrane	GO:0009535	Cellular Component	90%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	90%
Blast2go	cytosolic ribosome	GO:0022626	Cellular Component	90%
Blast2go	apoplast	GO:0048046	Cellular Component	90%

Source	InterPros	Term	Type	Identity
Sma3	Ribulose bisphosphate carboxylase small chain, domain	IPR000894	-	-
Sma3	Proteinase inhibitor I3, Kunitz legume	IPR002160	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-

Full-Lengther Next Prediction

SNPs (tot: 55)

Position	A %	C %	G %	T %	Probability
66			33	66	0.997452
75			20	80	0.995493
88	20		80		0.995493
111	20		80		0.995493
112		20	80		0.995493
113	20	80			0.995493
165		25	75		0.996473
166		66	33		0.997452
188	33		66		0.997452
191			66	33	0.997452
192		66		33	0.997452
231	20	80			0.995493
233		80		20	0.995493
235			80	20	0.995493
276	33		66		0.997452
277		33	66		0.997452
279	66			33	0.997452
286	25	75			0.996473
289	75			25	0.996473
378	20			80	0.995493
387		14		85	0.993533
617	7		92		0.999664
780		7		92	0.999602
781	7		92		0.999602
786		3		88	0.998862
787	3		81		1.0
788	7			92	0.999602
789	88	7		3	0.999079
795		9	85	4	0.999726
796	15		85		1.0
798		10	84	5	0.999846
800	5			82	0.999919
806	15			84	0.999986
823	10			90	0.90298
824		10	90		0.90298
825	10		90		0.90298
826		90		10	0.90298
827		90		10	0.90298
836	16			66	0.988813
837		16		66	0.988813
838	16			83	0.994512
866	10		90		0.90298
867		10	90		0.90298
868	10		90		0.90298
869			90	10	0.90298
870		90		10	0.90298
892		59		40	1.0
922	11		84	3	1.0
923	88	12			1.0
926			88	12	1.0
936		5	50	45	1.0
954			15	84	0.999986
956	90			10	0.90298
958	10			90	0.90298
960	16		83		0.994512

SSRs (tot: 1)

Start position	End position	Sequence	Length
184	198	GCA GCA GCA GCA GCA	15

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain