SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene10317

Length: 845 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene10317

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2035	2/7
SustainPine v2.0	sp_v2.0_unigene9329	2/7
SustainPine v2.0	sp_v2.0_unigene25943	3/7

Source	Descriptions	Term	Type	Identity
AutoFact	Coronatine-insensitive protein, putative n=1 Tax=Ricinus communis RepID=B9SWQ0_RICCO	-	-	61%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	69%
Blast2go	coronitine insensitive 1	-	-	75%

Source	GOs	Term	Type	Identity
Blast2go	stomatal movement	GO:0010118	Biological Process	75%
Blast2go	response to insect	GO:0009625	Biological Process	75%
Blast2go	negative regulation of defense response	GO:0031348	Biological Process	75%
Blast2go	jasmonic acid mediated signaling pathway	GO:0009867	Biological Process	75%
Blast2go	defense response to bacterium	GO:0042742	Biological Process	75%
Blast2go	response to wounding	GO:0009611	Biological Process	75%
Blast2go	regulation of flower development	GO:0009909	Biological Process	75%
Blast2go	SCF-dependent proteasomal ubiquitin-dependent protein catabolic process	GO:0031146	Biological Process	75%
Blast2go	shade avoidance	GO:0009641	Biological Process	75%
Blast2go	response to far red light	GO:0010218	Biological Process	75%
Blast2go	defense response to fungus	GO:0050832	Biological Process	75%
Blast2go	protein binding	GO:0005515	Molecular Function	75%
Blast2go	SCF ubiquitin ligase complex	GO:0019005	Cellular Component	75%

Source	InterPros	Term	Type	Identity
Sma3	F-box domain, cyclin-like	IPR001810	-	-
Sma3	TonB box, conserved site	IPR010916	-	-
Sma3	Leucine-rich repeat 2	IPR013101	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LQ74

Fln msg: Distance to subject end: 20 aas, your sequence is shorter than subject: 281 - 603

Fln protein: QFTFLSVENHCELLRLCTNLEVLEVRNVIGDRGLEVVANHCKKLRRLRVEAGEEEDEDNEQRLVSHRGLSMIAQGCLNLEFIAVYLTDISNLALETVGEYCKKLRDFRLVLLDKQEQITDLPLDNGVVALLRGCSKLTRFGLYLRPGGLTDRGLGYIGKYSTNVRWMLLGFVGEHEQGLLEFSKGCSKLERLEMRGCCFTESEIAEAVLNLKSLKYIWVQGYKGTATGEELLAMSRPFWNIEFTPPLKVTRDELDDMEEESSGHQPAQILAYYSLAGRRTT

Protein Length: 282

Fln nts: CAGTTCACGTTTTTGAGTGTAGAAAATCATTGCGAGTTACTTCGTTTATGCACTAACCTTGAAGTTCTAGAGGTACGGAATGTGATTGGAGACAGAGGGCTAGAAGTTGTTGCAAACCACTGCAAAAAGTTAAGAAGACTGAGGGTAGAGGCCGGGGAAGAAGAAGATGAAGATAATGAGCAGCGTTTAGTTTCTCACAGAGGGCTTTCCATGATAGCTCAAGGCTGCCTCAATCTGGAGTTTATTGCTGTTTACTTAACAGATATAAGCAACTTGGCATTAGAGACCGTTGGAGAATATTGCAAAAAGCTTAGGGACTTTCGTTTGGTTTTGTTGGATAAACAAGAGCAAATCACTGATCTACCTCTTGATAATGGAGTTGTAGCTTTGTTGCGCGGGTGTAGCAAGTTAACCAGATTTGGATTGTACTTAAGGCCTGGAGGATTGACTGACAGAGGGCTTGGTTATATTGGAAAATACAGTACAAATGTAAGGTGGATGCTGTTGGGATTTGTTGGAGAACATGAACAGGGTCTCCTTGAATTTTCAAAGGGATGCTCAAAACTGGAGAGGCTTGAAATGAGAGGTTGTTGTTTCACTGAATCTGAAATAGCAGAAGCAGTGCTGAACTTGAAATCCTTGAAGTATATCTGGGTGCAAGGATACAAAGGAACGGCAACAGGTGAGGAGCTTCTGGCTATGTCACGGCCATTTTGGAACATAGAGTTTACCCCACCTCTCAAAGTGACAAGAGATGAACTTGATGATATGGAAGAAGAATCCAGTGGACACCAACCGGCACAGATCTTGGCTTACTATTCTCTGGCCGGAAGAAGAACAACATT

Fln Alignment:

Contig10317___QFTFLSVENHCELLRLCTNLEVLEVRNVIGDRGLEVVANHCKKLRRLRVXXXXXXXXXXXQR-LVSHRGLSMIAQGCLNLEFIAVYLTDISNLALETVGEYCKKLRDFRLVLLDKQEQITDLPLDNGVVALLRGCSKLTRFGLYLRPGGLTDRGLGYIGKYSTNVRWMLLGFVGEHEQGLLEFSKGCSKLERLEMRGCCFTESEIAEAVLNLKSLKYIWVQGYKGTATGEELLAMSRPFWNIEFTPPLKVTRDEL-DDMEEESSGHQPAQILAYYSLAGRRT
B8LQ74__________________QYTFLSTENHCQLAGLCPNLEILEVRNVIGDKGLEVVANTCKKLKRLRVERGADDPTLEDEQGWVSHKGLSSVAQGCPLLEYIAVYVSDICNSTLETFGQCCKNLKDFRLVLLDKEEHITDLPLDNGVMALLRGCQKLSRFAFYVRPGGLTDTGLAYIGEYSTNVRWMLLGFAGETDQGILEFSKGCPKLERLEIRGCSFSESALAAAVLRLKSLKYIWVQGYNATVTGANLLAMARPYWNIEFSPGLQSTKDVLVEDMAAEKMQDRVAQLLAYYSLAGNRT

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
677	25		75		0.996473
680	75			25	0.996473
681		75		25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain