SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene10120

Length: 638 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene10120 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene10971	4/4

Source	Descriptions	Term	Type	Identity
AutoFact	Putative beta-1,3-glucan synthase n=1 Tax=Nicotiana alata RepID=Q93XQ3_NICAL	-	-	71%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	84%
Blast2go	callose synthase	-	-	87%

Source	ECs	Term	Type	e value	Identity
Blast2go	1,3-beta-glucan synthase.	EC:2.4.1.34	-	0.0	87%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Starch and sucrose metabolism	00500		0.0	87%

Source	GOs	Term	Type	Identity
Blast2go	(1->3)-beta-D-glucan biosynthetic process	GO:0006075	Biological Process	87%
Blast2go	pollen wall assembly	GO:0010208	Biological Process	87%
Blast2go	microsporogenesis	GO:0009556	Biological Process	87%
Blast2go	regulation of pollen tube growth	GO:0080092	Biological Process	87%
Blast2go	pollen germination	GO:0009846	Biological Process	87%
Blast2go	1,3-beta-D-glucan synthase activity	GO:0003843	Molecular Function	87%
Blast2go	1,3-beta-D-glucan synthase complex	GO:0000148	Cellular Component	87%

Source	InterPros	Term	Type	Identity
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Glycosyl transferase, family 48	IPR003440	-	-
Sma3	K Homology domain	IPR004087	-	-
Sma3	K Homology domain, type 1	IPR004088	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-

Full-Lengther Next Prediction

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
12			33	66	0.997452
13		33	66		0.997452
15		33		66	0.997452
16	33		66		0.997452
17	33			66	0.997452
587		66	33		0.997452

SSRs (tot: 1)

Start position	End position	Sequence	Length
161	173	GAT GAT GAT GAT G	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain