SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene9996

Length: 340 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene9996
TAGCAATTATGGGGATGGAACCTGGTATTGTGAAAGATGTGATCGGAATGTTCCTGAGTGTGATTATAGATACCTGCTTCAAGCCCAAGTGCAAGACCACACTGGGTTGACTTGGGTCACTGCTTTCCAGGAAGCAGGAGAGGAAATTATGGGTGTCACAGCAAAGCAGCTCTACACGGTGAAGCATGTAGAACAAGATGATGTCACTTTTGCAGAGATTATACGAAAAGTTATTTTCAATCAGTATTTATTCAAACTGAAAGTGAAAGAAGAGACATACGGTGATGAACAGCGGGTAAAGTGCACAGTTGTTAAAGCAGAAAATTAGATTATTCACATT

Ace file of the UniGene biog3_v1.0_unigene9996 (antisense)

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene27923	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	RPA 70kDa subunit [Pisum sativum]	-	-	63%
FL-Next	tr=Putative uncharacterized protein; Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress).	-	-	70%
Blast2go	replication factor a1	-	-	77%

Source	GOs	Term	Type	Identity
Blast2go	male meiosis I	GO:0007141	Biological Process	77%
Blast2go	chiasma assembly	GO:0051026	Biological Process	77%
Blast2go	male gamete generation	GO:0048232	Biological Process	77%
Blast2go	pollen development	GO:0009555	Biological Process	77%
Blast2go	reciprocal meiotic recombination	GO:0007131	Biological Process	77%
Blast2go	nuclear chromatin	GO:0000790	Cellular Component	77%

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Nucleic acid binding, OB-fold, tRNA/helicase-type	IPR004365	-	-
Sma3	Replication factor-a protein 1 Rpa1	IPR004591	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	Replication factor-A protein 1, N-terminal	IPR007199	-	-
Sma3	Nucleic acid-binding, OB-fold	IPR012340	-	-
Sma3		IPR013084	-	-
Sma3	Replication factor A, C-terminal	IPR013955	-	-
Sma3	APOBEC/CMP deaminase, zinc-binding	IPR016192	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: D7KGL1

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 129 aas, your sequence is shorter than subject: 109 - 822

Fln protein: SNYGDGTWYCERCDRNVPECDYRYLLQAQVQDHTGLTWVTAFQEAGEEIMGVTAKQLYTVKHVEQDDVTFAEIIRKVIFNQYLFKLKVKEETYGDEQRVKCTVVKAEN*

Protein Length: 110

Fln nts: TAGCAATTATGGGGATGGAACCTGGTATTGTGAAAGATGTGATCGGAATGTTCCTGAGTGTGATTATAGATACCTGCTTCAAGCCCAAGTGCAAGACCACACTGGGTTGACTTGGGTCACTGCTTTCCAGGAAGCAGGAGAGGAAATTATGGGTGTCACAGCAAAGCAGCTCTACACGGTGAAGCATGTAGAACAAGATGATGTCACTTTTGCAGAGATTATACGAAAAGTTATTTTCAATCAGTATTTATTCAAACTGAAAGTGAAAGAAGAGACATACGGTGATGAACAGCGGGTAAAGTGCACAGTTGTTAAAGCAGAAAATTAGATTATTCACATT

Fln Alignment:

Contig9996___SNYGDGTWYCERCDRNVPECDYRYLLQAQVQDHTGLTWVTAFQEAGEEIMGVTAKQLYTVKHVEQDDVTFAEIIRKVIFNQYLFKLKVKEETYGDEQRVKCTVVKAE
D7KGL1_________________TNNGDGTWRCEKCDKCVDECDYRYILQIQLQDHTGLTWATAFQEAGEEIMGMSAKDLYYVKYENQEEEKFEDIIRSVAFTKYIFKLKIKEETYSDEQRVKATVVKAE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain