SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene9995

Length: 330 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene9995
TATTGAGAGGGCTGCTAGAAGGGCATTTTTGCAAACTGATAATGCCTTTGCTGAGGCATTGCTTACATGATGCTGGTCTATGTTCGGGTACAACAGCTTTGGTTGCTCTGATTATTGGAAGGTATCTTCTGGTTGCAAATGCAGGAGATTGTCGAGCTGTGTTATCAAGGCGTGGAAAGGCCATTGAAATGTCAAGGGATCACAGGCCTGGTTGTAACAAGGAGAGGATACGCATTGAAGCTTCTGGGGGTTATATTGATAATGGGTATTTGAATGGCCAACTGAATGTTACAAGAGCTCTGGGTGACTGGCACATGGAAGGTTTACATT

Ace file of the UniGene biog3_v1.0_unigene9995 (antisense)

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene9404	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	protein phosphatase 2C [Mesembryanthemum crystallinum]	-	-	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Blast2go	protein phosphatase 2c	-	-	76%

Source	GOs	Term	Type	Identity
Blast2go	regulation of defense response to virus	GO:0050688	Biological Process	76%
Blast2go	protein dephosphorylation	GO:0006470	Biological Process	76%
Blast2go	metal ion binding	GO:0046872	Molecular Function	76%
Blast2go	protein serine/threonine phosphatase activity	GO:0004722	Molecular Function	76%
Blast2go	protein serine/threonine phosphatase complex	GO:0008287	Cellular Component	76%

Source	InterPros	Term	Type	Identity
Sma3	Protein phosphatase 2C	IPR015655	-	-
Sma3	Protein phosphatase 2C-like	IPR001932	-	-
Sma3	Protein phosphatase 2C, manganese/magnesium aspartate binding site	IPR000222	-	-
Sma3		IPR014045	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LQA0

Fln msg: Distance to subject end: 121 aas, your sequence is shorter than subject: 109 - 397

Fln protein: LRGLLEGHFCKLIMPLLRHCLHDAGLCSGTTALVALIIGRYLLVANAGDCRAVLSRRGKAIEMSRDHRPGCNKERIRIEASGGYIDNGYLNGQLNVTRALGDWHMEGLH

Protein Length: 110

Fln nts: TATTGAGAGGGCTGCTAGAAGGGCATTTTTGCAAACTGATAATGCCTTTGCTGAGGCATTGCTTACATGATGCTGGTCTATGTTCGGGTACAACAGCTTTGGTTGCTCTGATTATTGGAAGGTATCTTCTGGTTGCAAATGCAGGAGATTGTCGAGCTGTGTTATCAAGGCGTGGAAAGGCCATTGAAATGTCAAGGGATCACAGGCCTGGTTGTAACAAGGAGAGGATACGCATTGAAGCTTCTGGGGGTTATATTGATAATGGGTATTTGAATGGCCAACTGAATGTTACAAGAGCTCTGGGTGACTGGCACATGGAAGGTTTACATT

Fln Alignment:

Contig9995___CLHDAGLCSGTTALVALIIGRYLLVANAGDCRAVLSRRGKAIEMSRDHRPGCNKERIRIEASGGYIDNGYLNGQLNVTRALGDWHMEGL
B8LQA0_________________CSHDAGLSSGTTALVAVIIGRYLLVANAGDCRAVLSRRGKAIEMSRDHRPDCTKERIRIEASGGYIDDGYLNGQLNVTRALGDWHMEGL

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
114			33	66	0.997452
263	50			50	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain