SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene9993

Length: 826 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene9993

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene959	9/12

Source	Descriptions	Term	Type	Identity
AutoFact	putative uracil phosphoribosyltransferase [Arabidopsis thaliana] sp\|Q9FKS0.1\|UKL1_ARATH RecName: Full=Uridine kinase-like protein 1, chloroplastic; Includes: RecName: Full=Uridine kinase; Short=UK; Includes: RecName: Full=Putative uracil phosphoribosyltra	-	-	80%
FL-Next	sp=Uridine kinase-like protein 1, chloroplastic; Arabidopsis thaliana (Mouse-ear cress).	-	-	74%
Blast2go	uracil phosphoribosyltransferase	-	-	90%

Source	ECs	Term	Type	e value	Identity
Blast2go	Uracil phosphoribosyltransferase.	EC:2.4.2.9	-	0.0	90%

Source	KEGGs	Term	Type	Identity
Blast2go	Pyrimidine metabolism	00240		90%
Blast2go	Metabolic pathways	01100		90%
Blast2go	Uridine kinase.	EC:2.7.1.48	-	90%

Source	KEGGs	Term	Type	Identity
Blast2go	Pyrimidine metabolism	00240		90%
Blast2go	Drug metabolism - other enzymes	00983		90%
Blast2go	Metabolic pathways	01100		90%
Blast2go	Transferases, Transferring phosphorous-containing groups, Phosphotransferases with an alcohol group as acceptor.	EC:2.7.1.-	-	90%

Source	KEGGs	Term	Identity
Blast2go	Pentose phosphate pathway	00030	90%
Blast2go	Lipopolysaccharide biosynthesis	00540	90%
Blast2go	Nicotinate and nicotinamide metabolism	00760	90%
Blast2go	Metabolic pathways	01100	90%

Source	GOs	Term	Type	Identity
Blast2go	UMP biosynthetic process	GO:0006222	Biological Process	90%
Blast2go	phosphorylation	GO:0016310	Biological Process	90%
Blast2go	uracil phosphoribosyltransferase activity	GO:0004845	Molecular Function	90%
Blast2go	uridine kinase activity	GO:0004849	Molecular Function	90%
Blast2go	phosphotransferase activity, alcohol group as acceptor	GO:0016773	Molecular Function	90%
Blast2go	ATP binding	GO:0005524	Molecular Function	90%
Blast2go	cytoplasm	GO:0005737	Cellular Component	90%

Source	InterPros	Term	Type	Identity
Sma3	Uridine kinase	IPR000764	-	-
Sma3	Phosphoribosyltransferase	IPR000836	-	-
Sma3	Phosphoribulokinase/uridine kinase	IPR006083	-	-
Sma3	Protein of unknown function DUF1296	IPR009719	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9FKS0

Fln msg: Overlapping hits, possible frame ERROR between 277 and 277, Unexpected stop codon in the beginning of your sequence, Distance to subject end: 60 aas, your sequence is shorter than subject: 275 - 486

Fln protein: M*GESINVPVYDFKLHRQCSNSFRKVNPADVIILEGILVFHDPRVREMMNLKIFVDTDADVRLARRIRRDTLDRGRDVNSILDQYAKFVKPxxDDLYYLPKYADVIIPRGGDNYVAINLIVQHIQTKLGQHDLCKMHTLIRDRETTKHDFVFYSDRLIRLVVENGLGHLPFTEKHIVTPTGSIYTGVDFCKKLCGVSIIRSGESMENALRACCKGIKIGKILILRHGDNGKQPIYEKLPNDIHERHVLLLDPVLATGNSAVHAIELLIQKGVPES

Protein Length: 276

Fln nts: AATGTAGGGTGAATCCATTAATGTTCCTGTTTATGATTTCAAGCTTCATCGTCAGTGTTCTAATTCCTTTCGCAAGGTGAATCCAGCAGATGTCATTATTTTAGAGGGAATTTTAGTGTTTCATGATCCCCGTGTCCGAGAAATGATGAACTTGAAGATCTTTGTTGACACAGATGCTGATGTAAGGCTGGCTAGGCGGATAAGACGTGATACACTTGATAGAGGAAGAGATGTGAATTCTATCCTTGATCAGTATGCCAAGTTTGTCAAGCCAxxxxxxGATGATTTATACTACCTTCCAAAGTATGCTGATGTTATTATCCCACGAGGAGGAGACAACTATGTTGCAATCAATCTTATTGTGCAACACATTCAGACAAAGCTTGGACAACATGATCTGTGCAAGATGCATACACTCATACGGGATCGTGAAACCACAAAGCATGATTTTGTCTTTTACTCAGATCGGCTCATTCGATTGGTTGTTGAGAATGGCCTAGGCCATCTTCCGTTCACCGAAAAACATATCGTCACTCCTACAGGATCCATCTACACTGGAGTTGATTTCTGCAAAAAGTTGTGTGGAGTGTCAATTATCCGAAGTGGGGAAAGCATGGAGAATGCATTGCGTGCATGTTGTAAGGGAATCAAAATTGGTAAAATTCTAATCCTTCGGCATGGAGATAATGGTAAACAGCCGATTTATGAAAAATTACCGAATGATATACATGAACGTCATGTTTTGCTCCTGGATCCCGTTCTAGCAACAGGAAACTCAGCTGTGCACGCTATTGAACTTCTAATACAGAAAGGAGTGCCAGAATCCC

Fln Alignment:

Contig9993___GESINVPVYDFKLHRQCSNSFRKVNPADVIILEGILVFHDPRVREMMNLKIFVDTXXXXXXXXXXXXXXXXXXXXVNSILDQYAKFVKPSFDDLYYLP--KYADVIIPRGGDNYVAINLIVQHIQTKLGQHDLCK----------------MHTLIRDRETTKHDFVFYSDRLIRLVVENGLGHLPFTEKHIVTPTGSIYTGVDFCKKLCGVSIIRSGESMENALRACCXXXXXXXXXXXRHGDNGKQPIYEKLPNDIHERHVLLLDPVLATGNSAVHAIELLIQKGVPES
Q9FKS0_________________GQPYQVPIYDFKTHQRRSDTFRQVNASDVIILEGILVFHDSRVRNLMNMKIFVDTDADVRLARRIRRDTVERGRDVNSVLEQYAKFVKPAFDD-FVLPSKKYADVIIPRGGDNHVAVDLITQHIHTKLGQHDLCKIYPNVYVIQSTFQIRGMHTLIREKDISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGAVYTGVDFCKKLCGVSIIRSGESMENALRACCKGIKIGKILIHRDGDNGKQLIYEKLPHDISERHVLLLDPVLATGNSANQAIELLIQKGVPEA

SNPs (tot: 14)

Position	A %	C %	G %	T %	Probability
72	33			66	0.997452
73	33	66			0.997452
74			66	33	0.997452
75		66	33		0.997452
76	66			33	0.997452
285	33		66		0.997452
468	33	66			0.997452
470			66	33	0.997452
471	66		33		0.997452
478	20	80			0.995493
625		16	83		0.994512
627	83			16	0.994512
682	25		75		0.996473
686			75	25	0.996473

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain