SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene9947

Length: 286 nt

UniGene Fasta

>biog3_v1.0_unigene9947
ATTTGTGGATGGTTATCCATTTGCGTGTACATTATGGGTTGGCCTGGAGGGCTTTCACATGACAGTCAATGGGAAACAAATTACGTCATTTGAGTATCGCGAGAGTCTTGAGCCATGGCTGGTTAGTGGAGTGAGAATAGCAGGCGATTTAAAGCTACTTTCTGTACTGGCAAATGGGTTGCCAACATCAGAAGATCTGGACCTTGTTGTTGATTTGGAGTCTCTCAAGGCACCTCCTTTAATTCCTCTGAAGAAACTTCCAATGTTCATTGGAGTCTTTCACATT

Ace file of the UniGene biog3_v1.0_unigene9947

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene4511	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	beta-1,3-galactosyltransferase 15 [Arabidopsis thaliana] sp\|Q8L7F9.1\|B3GTF_ARATH RecName: Full=Beta-1,3-galactosyltransferase 15; AltName: Full=Galactosyltransferase 1 gb\|AAM91658.1\| unknown protein [Arabidopsis thaliana] gb\|ABR58858.1\| beta-1,3-galactosy	-	-	54%
FL-Next	Isoform 2 of Probable beta-1,3-galactosyltransferase 16 OS=Arabidopsis thaliana GN=B3GALT16	-	-	65%
Blast2go	beta- -galactosyltransferase 15-like	-	-	71%

Source	GOs	Term	Type	Identity
Blast2go	Lewis a epitope biosynthetic process	GO:0010493	Biological Process	71%
Blast2go	protein modification process	GO:0006464	Biological Process	71%
Blast2go	binding	GO:0005488	Molecular Function	71%
Blast2go	UDP-galactose:N-glycan beta-1,3-galactosyltransferase activity	GO:0010488	Molecular Function	71%
Blast2go	hydrolase activity	GO:0016787	Molecular Function	71%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	71%
Blast2go	membrane	GO:0016020	Cellular Component	71%
Blast2go	Golgi apparatus	GO:0005794	Cellular Component	71%

Source	InterPros	Term	Type	Identity
Sma3	Protein phosphatase 2C, manganese/magnesium aspartate binding site	IPR000222	-	-
Sma3	Galectin, carbohydrate recognition domain	IPR001079	-	-
Sma3	Protein phosphatase 2C-like	IPR001932	-	-
Sma3	Glycosyl transferase, family 31	IPR002659	-	-
Sma3	Ureohydrolase	IPR006035	-	-
Sma3	Concanavalin A-like lectin/glucanase, subgroup	IPR013320	-	-
Sma3		IPR014045	-	-
Sma3	Protein phosphatase 2C	IPR015655	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9ASW1-2

Fln msg: Distance to subject end: 178 aas, your sequence is shorter than subject: 95 - 559

Fln protein: FVDGYPFACTLWVGLEGFHMTVNGKQITSFEYRESLEPWLVSGVRIAGDLKLLSVLANGLPTSEDLDLVVDLESLKAPPLIPLKKLPMFIGVFHI

Protein Length: 96

Fln nts: ATTTGTGGATGGTTATCCATTTGCGTGTACATTATGGGTTGGCCTGGAGGGCTTTCACATGACAGTCAATGGGAAACAAATTACGTCATTTGAGTATCGCGAGAGTCTTGAGCCATGGCTGGTTAGTGGAGTGAGAATAGCAGGCGATTTAAAGCTACTTTCTGTACTGGCAAATGGGTTGCCAACATCAGAAGATCTGGACCTTGTTGTTGATTTGGAGTCTCTCAAGGCACCTCCTTTAATTCCTCTGAAGAAACTTCCAATGTTCATTGGAGTCTTTCACATT

Fln Alignment:

Contig9947___FVDGYPFACTLWVGLEGFHMTVNGKQITSFEYRESLEPWLVSGVRIAGDLKLLSVLANGLP
Q9ASW1-2_______________FLKGSPFTAALWFGLEGFHMTINGRHETSFAYREKLEPWLVSAVKVSGGLKILSVLATRLP

SNPs (tot: 3)

Position	C %	G %	T %	Probability
26		33	66	0.997452
27	33	66		0.997452
28	33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain