SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene9908

Length: 1531 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene9908 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene5688	24/24

Source	Descriptions	Term	Type	Identity
AutoFact	D-glycerate 3-kinase [Arabidopsis thaliana] gb\|AEE36395.1\| D-glycerate 3-kinase [Arabidopsis thaliana]	-	-	63%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	86%
Blast2go	d-glycerate 3-kinase	-	-	78%

Source	ECs	Term	Type	e value	Identity
Blast2go	Glycerate kinase.	EC:2.7.1.31	-	0.0	78%

Source	KEGGs	Term	Identity
Blast2go	Glycine, serine and threonine metabolism	00260	78%
Blast2go	Glycerolipid metabolism	00561	78%
Blast2go	Glyoxylate and dicarboxylate metabolism	00630	78%
Blast2go	Methane metabolism	00680	78%
Blast2go	Metabolic pathways	01100	78%

Source	GOs	Term	Type	Identity
Blast2go	phosphorylation	GO:0016310	Biological Process	78%
Blast2go	photorespiration	GO:0009853	Biological Process	78%
Blast2go	SRP-dependent cotranslational protein targeting to membrane	GO:0006614	Biological Process	78%
Blast2go	glycerate kinase activity	GO:0008887	Molecular Function	78%
Blast2go	ATP binding	GO:0005524	Molecular Function	78%
Blast2go	GTP binding	GO:0005525	Molecular Function	78%
Blast2go	chloroplast envelope	GO:0009941	Cellular Component	78%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	78%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LL83

Fln msg: your sequence is shorter than subject: 402 - 423

Fln protein: CDNRGIPPFKFVRNVADNKFVNRGFTTASSSSRVVEFGSDRKRRLMSGQMLAMALPSKTASSAMVSSVADLYEFICRGPLLEKMGSNLQEVADTIDRWLECGIQLCRLLGFDELLLTEAQKVRVYHYYVPVYLWCERELLQHRAKFKDDADEIPPLVFGISAPQGSGKTTLVYALDYLFNVAGRKAASISIDDFYLTAADQANLSGEYAGNTLLELRGNAGSHDLAFGTDTLKNLCSLTKEGAKAKIPRYDKSAYNGRGDRADPSTWPEIEGPLEVILLEGWMLGFKPLSSEVVKAVDPQLEAVNRNLESYYDAWEMFIGSWIIIKVDDTQWVYEWRLQAEIAMREDGKPGMSDEEVADFVSRYMPAYKAYLPVLYSDGPRGSKPEHTLVVEVDENRNPLG*

Protein Length: 403

Fln nts: AATGTGACAATCGGGGTATCCCGCCCTTCAAATTCGTCCGAAATGTAGCGGACAACAAATTCGTGAACCGCGGGTTCACTACCGCGAGTTCGAGTTCAAGGGTGGTGGAATTTGGATCTGATAGGAAGCGCCGGCTAATGTCGGGGCAAATGTTAGCGATGGCATTACCGTCAAAGACTGCATCCTCTGCAATGGTATCCTCGGTGGCTGACCTTTATGAATTCATATGCAGAGGCCCCCTGCTGGAAAAGATGGGGTCGAATCTCCAGGAGGTCGCTGATACTATTGACCGGTGGCTTGAGTGCGGGATCCAGCTCTGCCGCCTTCTCGGGTTTGATGAGCTTCTTCTGACAGAGGCGCAGAAGGTTAGGGTTTATCATTATTATGTACCAGTCTATTTATGGTGCGAGCGTGAGCTGTTGCAGCACAGGGCCAAGTTCAAAGATGATGCAGATGAAATTCCTCCCCTTGTGTTTGGCATCAGTGCACCTCAGGGTAGTGGCAAGACAACTCTAGTGTATGCACTTGATTATCTCTTCAACGTAGCAGGCAGAAAGGCTGCCTCGATATCCATTGATGACTTCTATTTAACAGCAGCTGATCAGGCAAATCTCTCTGGTGAATATGCAGGAAATACCCTATTGGAGTTACGGGGTAACGCTGGAAGCCATGATTTAGCATTTGGAACAGATACTTTAAAGAATCTGTGTAGCTTGACAAAAGAAGGTGCAAAGGCCAAGATACCACGGTATGATAAGTCAGCTTACAACGGGCGTGGGGACAGGGCAGATCCTTCTACATGGCCTGAAATTGAAGGGCCATTGGAGGTGATTTTGCTTGAAGGATGGATGCTTGGTTTTAAGCCACTATCAAGTGAAGTTGTGAAAGCTGTTGATCCACAGTTGGAAGCTGTAAACAGAAATCTTGAATCTTATTACGATGCATGGGAAATGTTTATTGGTTCGTGGATAATCATCAAAGTTGATGATACACAGTGGGTATATGAGTGGCGTTTGCAGGCTGAGATTGCAATGAGGGAAGATGGCAAGCCTGGAATGTCGGATGAAGAGGTTGCCGACTTTGTCTCAAGATATATGCCAGCATATAAAGCATATCTGCCTGTTCTGTACTCTGATGGACCAAGGGGTTCAAAGCCTGAACATACTCTTGTTGTTGAAGTTGATGAAAATCGAAATCCACTTGGTTGA___TACTTGTTCTGAACTCAAAGATGAAGAAGCATCATTGGGACTTAATTGTGCGCCATCCTTCTGCCAACAACTGACACAAAAATGGTACCGAGGGTTAATTTATCTCGGATTGTCTCAAGTTTTACCAGTCCAGTGTGTTGGTGTACAAAATATTTGTACTTTATATTAGAAAATAACTGGAAGCATTGATTTCGATTTTTTCTGCAGACAAAAATGATAGCGTTCACATAAACATCTAAAGTTCTGTCATGCTAGATATTCAGAAGAACACTCTATTTATCTCGGACATAGAATTGGAGTTGGGGAAGTGATAACAAGGATGG

Fln Alignment:

Contig9908___NRGIPPFKFVRNVA----DNKFVNRGFTTASSSSRVVEFGSDRKRRLMSGQMLAMALPSKTASSAMVSSVADLYEFICRGPLLEKMGSNLQEVADTIDRWLECGIQLCRLLGFDELLLTEAQKVRVYHYYVPVYLWCERELLQHRAKFKDDADEIPPLVFGISAPQGSGKTTLVYALDYLFNVAGRKAASISIDDFYLTAADQANLSGEYAGNTLLELRGNAGSHDLAFGTDTLKNLCSLTKEGAKAKIPRYDKSAYNGRGDRADPSTWPEIEGPLEVILLEGWMLGFKPLSSEVVKAVDPQLEAVNRNLESYYDAWEMFIGSWIIIKVDDTQWVYEWRLQAEIAMREDGKPGMSDEEVADFVSRYMPAYKAYLPVLYSDGPRGSKPEHTLVVEVDENRNPLG
B8LL83_________________NRSIQPFKFYRNVAVNGADNTFVDRGSNTAGSSSRVAEFGFGRKRWMMSGKMLAMALPSNAASSAMVSSVADLYEFICRGPLLEKTGSSVQEVANTIDQWLECGIQLCRLLGFNELLLTEAQKVRVYHYYVPVYLWCERELLQHRAKFKDDAEEIPPFVFGVSAPQGSGKTTLVYALDHLFNITGRKAASISIDDFYLTATDQAKLAGENAGNTLLELRGNAGSHDLAFGADTLKKLCSLTKTGTKAKIPRYDKSAYSGRGDRGDPFTWPEIEGPLDVILLEGWMLGFKPLSSEVVKAVDPQLEAVNRNLEAYYDAWEKFIGSWIIIKVDDTHWVYEWRLQAEIAMRKEGKPGMSDEQVADFVSRYMPAYKAYLPVLYSDGPRGSNPEHTLIVEVDEHRNPLG

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
48	66			33	0.997452
104	25		75		0.996473
105		75		25	0.996473
434			66	33	0.997452
937	16		83		0.994512
938	16	83			0.994512
984	16		83		0.994512
986	16	83			0.994512
988			83	16	0.994512
1161		25		75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain