SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene9876

Length: 1497 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene9876

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene7961	3/27
SustainPine v2.0	sp_v2.0_unigene21736	22/27
SustainPine v2.0	sp_v2.0_unigene25899	2/27

Source	Descriptions	Term	Type	Identity
AutoFact	Glycylpeptide N-tetradecanoyltransferase n=1 Tax=Ricinus communis RepID=B9RK90_RICCO	-	-	80%
FL-Next	sp=Glycylpeptide N-tetradecanoyltransferase 1; Arabidopsis thaliana (Mouse-ear cress).	-	-	76%
Blast2go	glycylpeptide n-tetradecanoyltransferase 1	-	-	88%

Source	ECs	Term	Type	e value	Identity
Blast2go	Phosphoethanolamine N-methyltransferase.	EC:2.1.1.103	-	0.0	88%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Glycerophospholipid metabolism	00564		0.0	88%
Blast2go	Glycylpeptide N-tetradecanoyltransferase.	EC:2.3.1.97	-	0.0	88%

Source	GOs	Term	Type	Identity
Blast2go	phosphatidylcholine biosynthetic process	GO:0006656	Biological Process	88%
Blast2go	choline biosynthetic process	GO:0042425	Biological Process	88%
Blast2go	embryonic shoot morphogenesis	GO:0010064	Biological Process	88%
Blast2go	N-terminal protein myristoylation	GO:0006499	Biological Process	88%
Blast2go	pollen tube growth	GO:0009860	Biological Process	88%
Blast2go	pollen development	GO:0009555	Biological Process	88%
Blast2go	pollen tube guidance	GO:0010183	Biological Process	88%
Blast2go	post-embryonic root development	GO:0048528	Biological Process	88%
Blast2go	phosphoethanolamine N-methyltransferase activity	GO:0000234	Molecular Function	88%
Blast2go	glycylpeptide N-tetradecanoyltransferase activity	GO:0004379	Molecular Function	88%
Blast2go	cytosol	GO:0005829	Cellular Component	88%
Blast2go	ribosome	GO:0005840	Cellular Component	88%

Source	InterPros	Term	Type	e value	Identity
Sma3	Acyl-CoA N-acyltransferase	IPR016181	-	0.0	-
Sma3	Myristoyl-CoA:protein N-myristoyltransferase	IPR000903	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: Q9LTR9

Fln msg: your sequence is shorter than subject: 386 - 434

Fln protein: EINGSIESLSRKAHILGTQPVGQFKDIQNHDLPEGPIEDPTPLSEVRQEPYNLPSLYEWCTCDINKDETSIEIYNLLTNNYVEDDENMFRFDYSKEFLRWALRPPGYFKSWHIGVRVKSTRKLVAFITGVPAKIRVRDRSVLMAEINFLCVHKKLRSKRLAPVLIKEVTRRVVLPTPIATCQYWHRSLNPKKLIEVGFSRLGARMTMSRTIKLYRLPETTVTPGFRAMERHDVPAVTRLLHNYLSKFVVAPDFNEDDVEHWLVPTEDVIDSYVVENPDTHEITDFCSFYTLPSSILGNANHSMLKAAYSYYNVSTRTPLLQLMNDVLIVAKKKNYDVFNALDIMQNESFLKDLKFGPGDGQLHYYLYNYRIKDALKPSQLGLVLL*

Protein Length: 387

Fln nts: GAGATTAATGGGTCCATTGAAAGTCTTAGCAGGAAAGCACACATTTTGGGAACACAACCAGTAGGCCAATTCAAGGACATCCAGAATCATGATTTGCCTGAAGGCCCAATCGAGGATCCGACCCCCCTGTCTGAGGTTAGGCAGGAGCCTTATAATCTGCCAAGCCTGTATGAGTGGTGTACTTGTGATATTAACAAGGACGAGACCTCTATAGAGATTTACAATCTCCTGACTAATAACTATGTGGAGGATGATGAGAACATGTTTAGATTTGATTACTCCAAGGAGTTCTTAAGATGGGCTCTCAGGCCTCCTGGTTATTTCAAGAGTTGGCATATTGGTGTTCGGGTTAAGAGCACCAGGAAGCTGGTGGCTTTCATCACTGGGGTCCCTGCCAAGATCAGGGTTCGAGATCGGTCCGTTCTGATGGCAGAGATCAATTTCCTATGTGTCCACAAGAAGCTTCGGTCCAAGAGACTTGCCCCTGTTCTGATCAAGGAGGTTACGAGGAGGGTTGTCCTCCCGACTCCGATTGCCACTTGCCAATATTGGCACAGGTCCTTAAACCCTAAGAAGCTCATCGAGGTTGGATTCTCTAGGCTTGGAGCTCGGATGACTATGAGCAGGACTATCAAATTATATCGGTTGCCAGAGACTACTGTGACTCCTGGTTTCAGGGCAATGGAAAGGCACGATGTCCCTGCAGTCACAAGGCTTCTACACAATTACTTGTCCAAGTTTGTTGTGGCTCCGGATTTCAATGAAGATGATGTGGAGCACTGGCTGGTTCCTACTGAAGATGTGATTGATAGCTATGTGGTCGAAAACCCTGACACTCATGAGATTACAGACTTCTGCAGCTTCTACACTCTGCCCTCCTCTATTCTTGGCAATGCCAACCACTCCATGCTGAAGGCTGCTTACTCCTATTATAACGTTTCAACCCGGACACCTCTGCTACAGTTGATGAATGACGTTCTCATTGTGGCAAAGAAGAAAAATTATGATGTGTTTAATGCTCTGGACATCATGCAGAATGAGTCATTTTTGAAGGACCTGAAATTTGGGCCTGGGGATGGACAGCTTCATTATTATCTCTACAATTATCGCATCAAAGATGCCCTTAAACCCTCTCAATTAGGGCTGGTTCTTTTATAG___TGACAGGTTCTTTGTTAATCTTGGATGCAAATAATGGCACGTGAAGGAAACAATCTAATTTTGATGTACTTATAGATCTTGTTTGTTTGCTGAATTTATAGTAGTCTCCACGTCTGATAATATTTTTCACCTCGTAAAGTCATCCAAGGTCATGTTCACCCAGTTACCTATATTTTAGTATTTGTTTTCAGATATTTTTGGATATGCAAACAGCTTGGGAGCTCAGACAAGTAATTTCGTTGTATGGAAATTGCAGATTCGGCTAACCACCTTGCCATCTTTTGGGATTCCCTTTTGATCATGTTCTGTCATATTAATAACATTGTTTGTAATCACATT

Fln Alignment:

Contig9876___TQPVGQFKDIQNHDLPEGPIEDPTPLSEVRQEPYNLPSLYEWCTCDINKDETSIEIYNLLTNNYVEDDENMFRFDYSKEFLRWALRPPGYFKSWHIGVRVKSTRKLVAFITGVPAKIRVRDRSVLMAEINFLCVHKKLRSKRLAPVLIKEVTRRV--------------VLPTPIATCQYWHRSLNPKKLIEVGFSRLGARMTMSRTIKLYRLPETTVTPGFRAMERHDVPAVTRLLHNYLSKFVVAPDFNEDDVEHWLVPTEDVIDSYVVENPDTHEITDFCSFYTLPSSILGNANHSMLKAAYSYYNVSTRTPLLQLMNDVLIVAKKKNYDVFNALDIMQNESFLKDLKFGPGDGQLHYYLYNYRIKDALKPS
Q9LTR9_________________TQPVGQFKDIGDTSLPEGPIEPATPLSEVKQEPYNLPSVYEWTTCDMNSDDMCSEVYNLLKNNYVEDDENMFRFNYSKEFLRWALRPPGYYQSWHIGVRAKTSKKLVAFISGVPARIRVRDEVVKMAEINFLCVHKKLRSKRLAPVMIKEVTRRVHLENIWQAAYTAGVILPTPITTCQYWHRSLNPKKLIDVGFSRLGARMTMSRTIKLYKLPDAPITPGFRKMEPRDVPAVTRLLRNYLSQFGVATDFDENDVEHWLLPREDVVDSYLVESPETHDVTDFCSFYTLPSTILGNPNYTTLKAAYSYYNVATQTSFLQLMNDALIVSKQKGFDVFNALDVMHNESFLKELKFGPGDGQLHYYLYNYRLKSALKPA

SNPs (tot: 14)

Position	A %	C %	G %	T %	Probability
315		85	14		0.993533
431	20		80		0.995493
434			80	20	0.995493
877	14	85			0.993533
878	14	85			0.993533
880		85	14		0.993533
914			83	16	0.994512
940	20			80	0.995493
1003	75	25			0.996473
1005	75			25	0.996473
1065	66	33			0.997452
1066	33		66		0.997452
1287	25			75	0.996473
1288		25		75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain