SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene9759

Length: 1306 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene9759 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene29032	119/119

Source	Descriptions	Term	Type	Identity
AutoFact	Pollen allergen CJP38 n=1 Tax=Cryptomeria japonica RepID=Q588B8_CRYJA	-	-	65%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	74%
Blast2go	beta- -glucanase	-	-	69%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3	GPCR, rhodopsin-like, 7TM	IPR000276	-	-
Sma3	Glycoside hydrolase, family 17	IPR000490	-	-
Sma3	Peptidase M14, carboxypeptidase A	IPR000834	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	X8	IPR012946	-	-
Sma3	Glycoside hydrolase, subgroup, catalytic domain	IPR013781	-	-
Sma3	Glycoside hydrolase, family 5, conserved site	IPR018087	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NTI6

Fln msg:

Fln protein: MAASNEQTTIILLGFMMIFCFSIFADGVNIGVNYGMLGDNLPPGKQVVTLLNGHNIGKMKLFDPDGGALNAFANSGIDVIVGVNNNDLKAISSSQDSANGWVKDNIVPYSSTSIKYIAVGNEVLPNTQYVSYLFPAMTNIQTAIQNANLQKIKVSTPHAFNVIGNSYPPSKGAFADNVMNTMRSILKFLSDNEAPFMANVYPYFSYVGDSKNIHQDYALFQPTAAAVPDGDHSYRNLFDAMVDSIFSAMEVLGYPNVPIVVTESGWPSAGADAATVENAKAYNNNLIKHVLSNAGTPKKPRTNIETYIFALFNENQKTGPETERHFGLFNPDQSPVYPVNFSP*

Protein Length: 345

Fln nts: CGGGAAGTTGAACGTCCTAGGCGGAGAATTTCTCAAATCTCTCATTTGCTGTGAGAAAT_-_ATGGCAGCGTCTAATGAACAGACGACGATAATCCTGTTAGGGTTTATGATGATCTTCTGTTTTTCAATCTTTGCCGATGGTGTTAATATAGGAGTGAACTACGGCATGCTCGGGGACAATCTCCCACCTGGAAAACAGGTGGTCACGTTGCTGAACGGCCACAACATCGGGAAAATGAAGCTTTTCGATCCGGACGGTGGTGCATTGAATGCTTTTGCAAATTCTGGGATCGATGTAATCGTGGGAGTCAATAATAACGATTTGAAGGCCATCTCCTCCAGTCAGGACTCAGCAAATGGTTGGGTTAAAGACAATATTGTCCCCTATTCCAGCACCAGTATCAAATATATTGCGGTGGGCAACGAGGTTTTGCCTAACACGCAGTACGTGTCGTATCTTTTTCCTGCGATGACCAACATTCAAACGGCGATTCAGAACGCCAATCTGCAGAAAATCAAGGTCTCTACCCCACATGCCTTCAATGTTATAGGCAACAGTTACCCGCCTTCAAAAGGAGCATTCGCTGACAATGTGATGAATACCATGAGGTCTATACTCAAATTTCTGTCAGATAACGAGGCTCCCTTCATGGCCAATGTGTATCCATATTTCAGCTACGTCGGCGACAGCAAGAACATTCATCAGGACTATGCTCTCTTTCAGCCCACTGCTGCGGCGGTGCCAGACGGAGATCACAGCTACCGCAACTTGTTCGATGCGATGGTGGATTCTATTTTCTCCGCAATGGAAGTCTTGGGCTATCCCAACGTCCCCATCGTCGTTACTGAAAGCGGATGGCCTTCTGCTGGCGCGGATGCGGCCACAGTTGAGAATGCTAAGGCTTATAACAACAATCTCATCAAACATGTATTATCGAATGCAGGGACGCCCAAGAAGCCGCGAACGAACATCGAAACCTATATCTTCGCTCTTTTCAACGAGAACCAAAAGACGGGGCCTGAGACGGAGCGTCACTTTGGGCTTTTCAACCCTGATCAAAGCCCTGTATACCCTGTCAACTTTTCTCCATAA___TTGAGCCAAGTCGATGTCGACCAGGCTTAGTAGTGATATATAATTATAGGAGAATGCTACATAAATAATCATCTATCTGACTAATGTGTAGATGACGATGTGTCGAACCCGTCGAACCGTATAATATGTTAAATATAAGTTGAAAGTTATATGTTAATGATAGGTATATAATATTAAGTTGTTTATAAGAGTGAAGGGTAACATGCCGTCTGGCA

Fln Alignment:

Contig9759___MAASNEQTTIILLGFMMIFCFSIFADGVNIGVNYGMLGDNLPPGKQVVTLLNGHNIGKMKLFDPDGGALNAFANSGIDVIVGVNNNDLKAISSSQDSANGWVKDNIVP-YSSTSIKYIAVGNEVLPNTQYVSYLFPAMTNIQTAIQNANLQK-IKVSTPHAFNVIGNSYPPSKGAFADNVMNTMRSILKFLSDNEAPFMANVYPYFSYVGDSKNIHQDYALFQPTAAAVPDGDHSYRNLFDAMVDSIFSAMEVLGYPNVPIVVTESGWPSAGADAATVENAKAYNNNLIKHVLSNAGTPKKPRTNIETYIFALFNENQKTGPETERHFGLFNPDQSPVYPVNFSP
A9NTI6_________________MAASKEQTKIILIGFIAIFCCSIFTDGDKIGVNYGMLGDNLPPADQVVTLINNNNIGKTRIFAANRDALNAFANSGIDVIVGVGNEELEAISSSQDSANGWVNNNIVPFYPATNIKYIAVGNEVLPSTQYVSYLFPAMTNIQTAVQNANLQNNIKVSTTHVMGVT-NGFPPSQGVFGDDVKDTMNSILKFLSDNGAPYMANVYPYFSYTGSGGSITLDYALFKSTSTVVTDNGRSYTNLFDAMVDTVISAMENLGYPNVPIVITESGWPSAGADAATVENAQSYNNNLIQHILSNAGTPKRSGTSIETYIFALFNENTKTGDEIERHFGLFNADQSPAYSVNFSP

SNPs (tot: 21)

Position	A %	C %	G %	T %	Probability
36	33		66		1.0
91	66		33		0.997452
179	87		12		0.992554
303	12		87		0.992554
304		12		87	0.992554
305	12			87	0.992554
306		87		12	0.992554
370	16			83	0.999991
933	88		11		0.923564
956	10	90			0.90298
1105	90	10			0.90298
1185	90	10			0.90298
1187	90			10	0.90298
1188	90			10	0.90298
1214			88	11	0.923564
1215			88	11	0.923564
1268		14	85		0.993533
1283	16	83			0.994512
1285	16		83		0.994512
1286		83		16	0.994512
1287		83		16	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain