SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene9715

Length: 2316 nt

UniGene Fasta

>biog3_v1.0_unigene9715
AATGTCTTTTGAATAGGGATATGGTATCAAGGCCATTGTCTGATGCTGATCGTATAAAGATTAAAAAGGCACTGAGGGGTGTTTAAGTTGAGGTGACACACAGGGCGAACATGCGTAGGAAATACCGCATTTCTGGATTAACGTCACAACCAACGAGGGAGCTTACGTTTCCAGTTGATGAGAGGGGAACAATGAAATCAGTAGTAGAGTATTTCCAAGAGACCTATGGGTTTACGATACAGCATACTAGCTTGCCTTGTCTTCAAGTTGGAAACCAGCAAAGGCCAAACTATTTGCCCATGGAGGTTTGCAAAATAGTCGAGGGCCAACGCTACTCTAAACGATTGAATGAACGACAAATTACTGCCCTGTTGAAAGTAACATGCCAGCGTCCTAAAGACCGAGAGATGGATATCTTACAGACTGTTTATCACAATGCATATCATGAGGATCCTTATGCAAAGGAATTTGGTATCAAAATTAGTGACAGACTAGCCTCCGTTGAAGCTCGGATTTTGCCTCCACCTTGGCTGAAGTATCATGATACTGGTAGGGAGAAAGATTGTTTGCCGCAGGTTGGCCAATGGAATATGATGAATAAGAAAATGGTGAATGGAGGAACTGTAAACTCCTGGGCCTGTGTCAACTTTTCTCGAAGTGTCCAGGACAGTGTTGCTCGTGGTTTTTGTCATGAATTGGCACAGATGTGTCAGATATCTGGCATGATATTTCATCCAGAACCTATAATTCCTATCCATGGGGCACGACCTGATCAAGTTGAGAGAGCACTGAAGACCGTGTACAAAGATGTTACTAACAAACTCAAGGGAAAGGAACTGGAACTTCTTGTTGTTATTTTGCCTGATAACAATGGTTCTTTGTATGGTGACCTGAAGCGTATATGTGAGACTGACCTTGGTTTGGTTTCCCAGTGCTGTCTGACGAAACATGTCTTTAAAATGAGCAAACAATATCTGGCAAATGTTGCCCTTAAAATTAATGTAAAGGTTGGTGGAAGAAACACTGTCTTAGTTGACGCACTGTCAAGGAGGATACCTTTGGTCAGCGACAAACCTACAATAATCTTTGGAGCAGATGTTACCCATCCACACCCTGGAGAAGATTCGAGCCCGTCAATAGCTGCTGTTGTAGCGTCTCAAGATTGGCCGGAAGTCACTAAATATGCAGGCTTAGTTTGTGCTCAGGCACATCGTCAGGAACTCATTCAGGATCTTTACAAAGTCTGGCAGGATCCTGTGCGAGGGTCTGCAACTGGAGGCATGATAAAGGAATTGTTAATTTCCTTCAGAAGGAATACAGGACACAAGCCGGAGCGTATAATATTTTACAGAGATGGAGTAAGCGAGGGTCAGTTTTATCAAGTTCTATTGTATGAGTTAGATGCTATTCGAAAGGCCTGTGCATCTCTTGAACCAAATTATCAACCTCCCGTTACTTTTGTGGTGGTTCAAAAACGTCACCATACCAGACTCTTTGCAAACAACCATCAAGATCGAAATGCGACAGACAGGAGTGGAAACATATTGCCAGGCACTGTAGTGGATTCCAAAATTTGCCATCCAACAGAATTTGACTTTTACCTCTGCAGCCATGCTGGTATTCAGGGAACTAGTAGGCCTGCCCATTATCATGTTCTTTGGGATGAAAACAAATTCACAGCTGATGGATTGCAGTCCTTAACCAACAATCTCTGTTACACATATGCGAGGTGCACACGGTCAGTTTCTATAGTACCCCCAGCGTATTATGCCCATCTGGCTGCATTTCGGGCTCGGTTTTATATGGAGCCAGAAACATCAGATAGTGGTTCCTTATCTAGTGGTGTTCCTGGTAGTCGCATGACTGCAGCTAGTTCAGGTTCTCGGAGCACTCGTGTACCTGCCGGAACTAGTGTTCGGCCCTTGCCAGCTCTGAAAGAAAATGTCAAGAGAGTTATGTTTTACTGTTAGATTTGATACATAGATGTTTGACATTTTTAAGTTCTATATATGCCATCCCTTTGTTGGGTTAAGTAGGCATTGAGTGACAGGCCAGGTGCATCACTACGATGCTTTCAAATTGCAAAGTTCTAGATTTCCAAAACTTAAGATCACACTCAAATCACTTCCTTTTCACCTCTTGTTCTGTTTGACATTTTTTAATTGGCTGCGGCCATTTAGATTGAAGAGACAACATTAAATTTTAGTTTGAACATTTGTGTTGTCAAGTGTCAGGTTTTCTTGAATTACAACTGGGCAATCAGTTCTTGTTCAAGACAGTGTAACCTTTCATCATGGTGTGAATTAATGGAACATT

Ace file of the UniGene biog3_v1.0_unigene9715

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene9118	110/110

Source	Descriptions	Term	Type	Identity
AutoFact	Eukaryotic translation initiation factor 2c, putative n=1 Tax=Ricinus communis RepID=B9SJV6_RICCO	-	-	85%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	99%
Blast2go	protein argonaute 1-like	-	-	89%

Source	GOs	Term	Type	e value	Identity
Blast2go	translational initiation	GO:0006413	Biological Process	0.0	89%
Blast2go	translation initiation factor activity	GO:0003743	Molecular Function	0.0	89%

Source	InterPros	Term	Type	Identity
Sma3	Domain of unknown function DUF1785	IPR014811	-	-
Sma3	Argonaute/Dicer protein, PAZ	IPR003100	-	-
Sma3	Stem cell self-renewal protein Piwi	IPR003165	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5ACK3

Fln msg: your sequence is longer than subject: 620 - 229

Fln protein: MRRKYRISGLTSQPTRELTFPVDERGTMKSVVEYFQETYGFTIQHTSLPCLQVGNQQRPNYLPMEVCKIVEGQRYSKRLNERQITALLKVTCQRPKDREMDILQTVYHNAYHEDPYAKEFGIKISDRLASVEARILPPPWLKYHDTGREKDCLPQVGQWNMMNKKMVNGGTVNSWACVNFSRSVQDSVARGFCHELAQMCQISGMIFHPEPIIPIHGARPDQVERALKTVYKDVTNKLKGKELELLVVILPDNNGSLYGDLKRICETDLGLVSQCCLTKHVFKMSKQYLANVALKINVKVGGRNTVLVDALSRRIPLVSDKPTIIFGADVTHPHPGEDSSPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLYKVWQDPVRGSATGGMIKELLISFRRNTGHKPERIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFANNHQDRNATDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADGLQSLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPETSDSGSLSSGVPGSRMTAASSGSRSTRVPAGTSVRPLPALKENVKRVMFYC*

Protein Length: 621

Fln nts: AATGTCTTTTGAATAGGGATATGGTATCAAGGCCATTGTCTGATGCTGATCGTATAAAGATTAAAAAGGCACTGAGGGGTGTTTAAGTTGAGGTGACACACAGGGCGAAC_-_ATGCGTAGGAAATACCGCATTTCTGGATTAACGTCACAACCAACGAGGGAGCTTACGTTTCCAGTTGATGAGAGGGGAACAATGAAATCAGTAGTAGAGTATTTCCAAGAGACCTATGGGTTTACGATACAGCATACTAGCTTGCCTTGTCTTCAAGTTGGAAACCAGCAAAGGCCAAACTATTTGCCCATGGAGGTTTGCAAAATAGTCGAGGGCCAACGCTACTCTAAACGATTGAATGAACGACAAATTACTGCCCTGTTGAAAGTAACATGCCAGCGTCCTAAAGACCGAGAGATGGATATCTTACAGACTGTTTATCACAATGCATATCATGAGGATCCTTATGCAAAGGAATTTGGTATCAAAATTAGTGACAGACTAGCCTCCGTTGAAGCTCGGATTTTGCCTCCACCTTGGCTGAAGTATCATGATACTGGTAGGGAGAAAGATTGTTTGCCGCAGGTTGGCCAATGGAATATGATGAATAAGAAAATGGTGAATGGAGGAACTGTAAACTCCTGGGCCTGTGTCAACTTTTCTCGAAGTGTCCAGGACAGTGTTGCTCGTGGTTTTTGTCATGAATTGGCACAGATGTGTCAGATATCTGGCATGATATTTCATCCAGAACCTATAATTCCTATCCATGGGGCACGACCTGATCAAGTTGAGAGAGCACTGAAGACCGTGTACAAAGATGTTACTAACAAACTCAAGGGAAAGGAACTGGAACTTCTTGTTGTTATTTTGCCTGATAACAATGGTTCTTTGTATGGTGACCTGAAGCGTATATGTGAGACTGACCTTGGTTTGGTTTCCCAGTGCTGTCTGACGAAACATGTCTTTAAAATGAGCAAACAATATCTGGCAAATGTTGCCCTTAAAATTAATGTAAAGGTTGGTGGAAGAAACACTGTCTTAGTTGACGCACTGTCAAGGAGGATACCTTTGGTCAGCGACAAACCTACAATAATCTTTGGAGCAGATGTTACCCATCCACACCCTGGAGAAGATTCGAGCCCGTCAATAGCTGCTGTTGTAGCGTCTCAAGATTGGCCGGAAGTCACTAAATATGCAGGCTTAGTTTGTGCTCAGGCACATCGTCAGGAACTCATTCAGGATCTTTACAAAGTCTGGCAGGATCCTGTGCGAGGGTCTGCAACTGGAGGCATGATAAAGGAATTGTTAATTTCCTTCAGAAGGAATACAGGACACAAGCCGGAGCGTATAATATTTTACAGAGATGGAGTAAGCGAGGGTCAGTTTTATCAAGTTCTATTGTATGAGTTAGATGCTATTCGAAAGGCCTGTGCATCTCTTGAACCAAATTATCAACCTCCCGTTACTTTTGTGGTGGTTCAAAAACGTCACCATACCAGACTCTTTGCAAACAACCATCAAGATCGAAATGCGACAGACAGGAGTGGAAACATATTGCCAGGCACTGTAGTGGATTCCAAAATTTGCCATCCAACAGAATTTGACTTTTACCTCTGCAGCCATGCTGGTATTCAGGGAACTAGTAGGCCTGCCCATTATCATGTTCTTTGGGATGAAAACAAATTCACAGCTGATGGATTGCAGTCCTTAACCAACAATCTCTGTTACACATATGCGAGGTGCACACGGTCAGTTTCTATAGTACCCCCAGCGTATTATGCCCATCTGGCTGCATTTCGGGCTCGGTTTTATATGGAGCCAGAAACATCAGATAGTGGTTCCTTATCTAGTGGTGTTCCTGGTAGTCGCATGACTGCAGCTAGTTCAGGTTCTCGGAGCACTCGTGTACCTGCCGGAACTAGTGTTCGGCCCTTGCCAGCTCTGAAAGAAAATGTCAAGAGAGTTATGTTTTACTGTTAG___ATTTGATACATAGATGTTTGACATTTTTAAGTTCTATATATGCCATCCCTTTGTTGGGTTAAGTAGGCATTGAGTGACAGGCCAGGTGCATCACTACGATGCTTTCAAATTGCAAAGTTCTAGATTTCCAAAACTTAAGATCACACTCAAATCACTTCCTTTTCACCTCTTGTTCTGTTTGACATTTTTTAATTGGCTGCGGCCATTTAGATTGAAGAGACAACATTAAATTTTAGTTTGAACATTTGTGTTGTCAAGTGTCAGGTTTTCTTGAATTACAACTGGGCAATCAGTTCTTGTTCAAGACAGTGTAACCTTTCATCATGGTGTGAATTAATGGAACATT

Fln Alignment:

Contig9715___MIKELLISFRRNTGHKPERIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFANNHQDRNATDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADGLQSLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPETSDSGSLSSGVPGSRMTAASSGSRSTRVPAGTSVRPLPALKENVKRVMFYC
D5ACK3_________________MIKELLISFRRNTGHKPERIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFANNHQDRNATDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADGLQSLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPETSDSGSLSSGVPGSRMTAASSGSRSTRVPAGTTVRPLPALKENVKRVMFYC

SNPs (tot: 15)

Position	A %	C %	G %	T %	Probability
1974		14	85		0.993533
2050	12			87	0.992554
2051		12	87		0.992554
2053		87		12	0.992554
2054	87			12	0.992554
2069		85		14	0.993533
2221	83			16	0.994512
2270	20		80		0.995493
2271		20		80	0.995493
2272	20			80	0.995493
2273		80		20	0.995493
2283	25			75	0.996473
2284		25	75		0.996473
2285	25		75		0.996473
2286			75	25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain