SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene9699

Length: 925 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene9699 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene21564	13/13

Source	Descriptions	Term	Type	Identity
AutoFact	40S ribosomal protein S19-1 [Arabidopsis thaliana] sp\|Q9SGA6.1\|RS191_ARATH RecName: Full=40S ribosomal protein S19-1 gb\|AAF14828.1\|AC011664_10 putative 40S ribosomal protein S19 [Arabidopsis thaliana] gb\|AAK44092.1\|AF370277_1 putative 40S ribosomal protei	-	-	83%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	97%
Blast2go	40s ribosomal protein s19	-	-	91%

Source	GOs	Term	Type	Identity
Blast2go	nucleolus	GO:0005730	Cellular Component	91%
Blast2go	vacuole	GO:0005773	Cellular Component	91%
Blast2go	cell wall	GO:0005618	Cellular Component	91%
Blast2go	cytosolic small ribosomal subunit	GO:0022627	Cellular Component	91%
Blast2go	membrane	GO:0016020	Cellular Component	91%

Source	InterPros	Term	Type	e value	Identity
Sma3	Ribosomal protein S19e	IPR001266	-	0.0	-
Sma3	Ribosomal protein S19e, conserved site	IPR018277	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
219	25			75	0.996473
221			25	75	0.996473
222	75			25	0.996473
729	12		87		0.992554
732			87	12	0.992554
733		87		12	0.992554
737	85	14			0.993533
738	14		85		0.993533
739		85		14	0.993533
740	14			85	0.993533
741			83	16	0.994512
809		75		25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain