SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene9697

Length: 1100 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene9697

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene16654	63/65
SustainPine v2.0	sp_v2.0_unigene22816	2/65

Source	Descriptions	Term	Type	Identity
AutoFact	Proteasome subunit beta type n=1 Tax=Picea sitchensis RepID=A9NMG7_PICSI	-	-	93%
FL-Next	sp=Proteasome subunit beta type; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Blast2go	proteasome subunit beta type-1	-	-	92%

Source	GOs	Term	Type	Identity
Blast2go	defense response to fungus, incompatible interaction	GO:0009817	Biological Process	92%
Blast2go	peptidase activity	GO:0008233	Molecular Function	92%
Blast2go	plasma membrane	GO:0005886	Cellular Component	92%
Blast2go	proteasome complex	GO:0000502	Cellular Component	92%
Blast2go	chloroplast	GO:0009507	Cellular Component	92%

Source	InterPros	Term	Type	e value	Identity
Sma3	Proteasome, subunit alpha/beta	IPR001353	-	0.0	-
Sma3	Proteasome, beta-type subunit, conserved site	IPR016050	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NMG7

Fln msg:

Fln protein: MAATEGIKQHQSTWSPYDNNGGTCIAIAGANYCVIAADTRMSTGYSILTRDYSKICNLSDKAVMASSGFQADVKALQKNLSARHLIYQHQHNKQMSCPAMAQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVFTYDAVGSYERVGYGAQGTGGTLMMPVLDNQLKSPSPLLLPSQDATTPLLESEAVDLVKDVFASAAERDIYTGDGLEIVVVNAEGIKREFLELRRD*

Protein Length: 231

Fln nts: AGACCGAGCTTTCTCATCGGAGTTTTAGCTGGTTCAGCTCGATTCTTCCATTTCCTTGTTTGAGTTTGGTGTGCATCCGTTTATCGGAGCTCCATTCTCTCATACTTTTTAGCTCTGTGCTGCATCAGCA_-_ATGGCTGCTACGGAAGGAATCAAACAGCACCAGTCGACATGGAGTCCGTATGACAACAACGGAGGAACATGTATTGCAATAGCTGGTGCCAATTACTGCGTGATTGCAGCAGATACCCGAATGTCCACTGGCTACAGCATTCTCACTCGCGATTACTCCAAAATTTGCAATCTATCAGATAAGGCTGTGATGGCGTCATCAGGATTTCAGGCTGATGTAAAGGCACTACAGAAAAATTTATCTGCAAGACATCTGATTTATCAACACCAGCATAACAAGCAAATGAGCTGTCCTGCCATGGCACAGCTACTCTCAAATACTCTTTACTACAAACGGTTTTTCCCTTACTATTCATTCAATGTTTTAGGTGGCCTAGACAATGAAGGAAAGGGCTGTGTCTTTACATATGATGCAGTTGGCTCATATGAACGAGTAGGATATGGTGCACAGGGGACGGGTGGGACACTTATGATGCCCGTTCTTGACAATCAGCTGAAATCTCCTAGTCCTCTGCTCTTACCATCTCAGGATGCTACAACTCCACTATTGGAATCAGAAGCGGTGGACTTGGTGAAGGATGTATTTGCTTCAGCTGCTGAAAGAGACATATACACTGGTGATGGGCTGGAAATAGTAGTTGTCAATGCAGAAGGTATCAAACGAGAGTTCTTGGAGTTGCGTCGTGATTGA___AACAATGAAATTGTTAAATCGGGTGTCATGCTCGATCTGATGGTAGACTATGCTTATGTCCAGGTCCCTGACTATGTTTCTACCATGAAAAAATTCTTCTACTTGTATAACGTTTTACTTGCCCTGTAGTTGTGATCATTTTGGTCCTTGTAGTGACGTTTGGCCAGTGTTCAAGGTTATGCGGATTAAGATCAAATGAGGCTTGCTCTATGAGGGCATTTATGTTGCGCTGTGCTACTTCTCTTTGGTTTAAATTGATTTTGTTCTTAAGGATAAAGAC

Fln Alignment:

Contig9697___MAATEGIKQHQSTWSPYDNNGGTCIAIAGANYCVIAADTRMSTGYSILTRDYSKICNLSDKAVMASSGFQADVKALQKNLSARHLIYQHQHNKQMSCPAMAQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVFTYDAVGSYERVGYGAQGTGGTLMMPVLDNQLKXXXXXXXXXQDATTPLLESEAVDLVKDVFASAAERDIYTGDGLEIVVVNAEGIKREFLELRRD
A9NMG7_________________MAATEGIKQHHSTWSPYDNNGGTCIAIAGSNYCVIAADTRMSTGYSILTRDYSKICNLADKCVMASSGFQADVKALQKNLSARHLIYQHQHNKQMSCPAMAQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVFTYDAVGSYERVGYGAQGTGGTLMMPVLDNQLKSPSPLLLPAQDATTPLSESEAVDLVKDVFASAAERDIYTGDGLEIVVVNAEGVKREFLELRRD

SNPs (tot: 48)

Position	A %	C %	G %	T %	Probability
12		25		75	0.996473
108	16			83	0.994512
110	14			85	0.993533
111	16			83	0.994512
112	14			85	0.993533
113	85		14		0.993533
114			71	28	1.0
115		85	14		0.993533
118	14			85	0.993533
119			85	14	0.993533
121			85	14	0.993533
124	14		85		0.993533
126	85	14			0.993533
129	71			28	1.0
139	12		87		0.992554
140	12	87			0.992554
142	87		12		0.992554
143		87		12	0.992554
211	85			14	0.993533
320	14			85	0.993533
321		16	83		0.994512
324			83	16	0.994512
424	12	87			0.992554
425	12	87			0.992554
459	10	90			0.90298
526	10			90	0.90298
573		10		90	0.90298
574	10		90		0.90298
575			90	10	0.90298
580	10	90			0.90298
581	90			10	0.90298
583			90	10	0.90298
598		90		10	0.90298
741	90			10	0.90298
748	12		87		0.992554
749		12	87		0.992554
751			87	12	0.992554
781			85	14	0.993533
782	85			14	0.993533
786	12			87	0.992554
789		87	12		0.992554
823	62			37	1.0
824	62	37			1.0
930		14		85	0.993533
932	87			12	0.992554
933		75		25	1.0
962	18			81	0.999994
963	18			81	0.999994

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain