SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene9614

Length: 269 nt

UniGene Fasta

>biog3_v1.0_unigene9614
TGAATCTATTGGATTCCGATATGTTGCAAGCGGTCCTTTGGTTCGATCATCTTACAGAGCTGGAGAGTTTTTCATTGAAAGCATGCTTAGGGAGCAGAAGGCTGTGGAATCTGCTTCTTAGTTCCTAGGTGGTAACATCTGGCAATATTTTGGCTGTTAGAAACAATATTTGCTGTTATTGTTATTGTAGGGGGCAGTCTGCTTCTTTGGAAACATCAGGCAACATTTTGCTCACGAGAAGCAAGTACTTATTGTTATTTTCATACATT

Ace file of the UniGene biog3_v1.0_unigene9614

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene989	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	lipoyl synthase [Arabidopsis thaliana] sp\|Q8LEE8.2\|LISC_ARATH RecName: Full=Lipoyl synthase, chloroplastic; AltName: Full=Lipoate synthase; Short=LS; Short=Lip-syn; AltName: Full=Lipoate synthase, plastidial; Short=LIP1p; AltName: Full=Lipoic acid synthas	-	-	82%
FL-Next	sp=Lipoyl synthase, mitochondrial; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	62%
Blast2go	protein	-	-	89%

Source	ECs	Term	Type	e value	Identity
Blast2go	Lipoyl synthase.	EC:2.8.1.8	-	0.0	89%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Lipoic acid metabolism	00785		0.0	89%
Blast2go	Metabolic pathways	01100		0.0	89%

Source	GOs	Term	Type	Identity
Blast2go	lipoate biosynthetic process	GO:0009107	Biological Process	89%
Blast2go	metal ion binding	GO:0046872	Molecular Function	89%
Blast2go	lipoate synthase activity	GO:0016992	Molecular Function	89%
Blast2go	4 iron, 4 sulfur cluster binding	GO:0051539	Molecular Function	89%
Blast2go	chloroplast	GO:0009507	Cellular Component	89%

Source	InterPros	Term	Type	Identity
Sma3	Lipoate synthase	IPR003698	-	-
Sma3	Ferredoxin thioredoxin reductase, alpha chain	IPR004207	-	-
Sma3	Elongator protein 3/MiaB/NifB	IPR006638	-	-
Sma3	Radical SAM	IPR007197	-	-
Sma3	Uncharacterised protein family UPF0250	IPR007454	-	-
Sma3	Aldolase-type TIM barrel	IPR013785	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NNH7

Fln msg: your sequence is shorter than subject: 40 - 386

Fln protein: ESIGFRYVASGPLVRSSYRAGEFFIESMLREQKAVESAS*

Protein Length: 41

Fln nts: TGAATCTATTGGATTCCGATATGTTGCAAGCGGTCCTTTGGTTCGATCATCTTACAGAGCTGGAGAGTTTTTCATTGAAAGCATGCTTAGGGAGCAGAAGGCTGTGGAATCTGCTTCTTAG___TTCCTAGGTGGTAACATCTGGCAATATTTTGGCTGTTAGAAACAATATTTGCTGTTATTGTTATTGTAGGGGGCAGTCTGCTTCTTTGGAAACATCAGGCAACATTTTGCTCACGAGAAGCAAGTACTTATTGTTATTTTCATACATT

Fln Alignment:

Contig9614___IGFRYVASGPLVRSSYRAGEFFIESMLREQKAVESAS
A9NNH7_________________MGFRYVASGPMVRSSYKAGEFYIKSMIEDDRKKASSS

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
224		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain