SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene9529

Length: 392 nt

UniGene Fasta

>biog3_v1.0_unigene9529
GGCGTTCCTGAGGCTTCTTCCGCCGCCGCCCGATGGTTTCTCTTTATCTGACACGTGGAAGGAGTACCAGAAGAACGAGGAGAGGGAGGGGTGGTGGTCCGGCGAAGGCTACGAAGAAATGCATATCCAGGGCAGAAGATGGGCGGGGAATATCCGTGATCGATACAATGTGAAAAAGGGGATGGATTACAAGGGTTCCATTTACGACGCAGCTCCGACATTCGAGTCCTATGGAGTCCCCCACGGTGACGGAGGTCTTATGAAGGCTGTTCCTGAGAAACACAGGAAATTTTTACAGGATCTTGTGTGGGTACACGAGGAGGAGGAAGTTGAGACTGGTGATCCCGAGATGAGCAGAACAAAGTTAATTGCTGTGCACGCAGGCCTACATT

Ace file of the UniGene biog3_v1.0_unigene9529

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene7568	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	Calcineurin-like phosphoesterase n=1 Tax=Glycine max RepID=C6ZS09_SOYBN	-	-	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Blast2go	calcineurin-like metallo-phosphoesterase-like protein	-	-	78%

Source	GOs	Term	Type	e value	Identity
Blast2go	protein serine/threonine phosphatase activity	GO:0004722	Molecular Function	0.0	78%

Source	InterPros	Term	Type	e value	Identity
Sma3	Metallophosphoesterase domain	IPR004843	-	0.0	-
Sma3	Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase	IPR006186	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NRK4

Fln msg: Distance to subject end: 91 aas, your sequence is shorter than subject: 130 - 301

Fln protein: AFLRLLPPPPDGFSLSDTWKEYQKNEEREGWWSGEGYEEMHIQGRRWAGNIRDRYNVKKGMDYKGSIYDAAPTFESYGVPHGDGGLMKAVPEKHRKFLQDLVWVHEEEEVETGDPEMSRTKLIAVHAGLH

Protein Length: 131

Fln nts: GGCGTTCCTGAGGCTTCTTCCGCCGCCGCCCGATGGTTTCTCTTTATCTGACACGTGGAAGGAGTACCAGAAGAACGAGGAGAGGGAGGGGTGGTGGTCCGGCGAAGGCTACGAAGAAATGCATATCCAGGGCAGAAGATGGGCGGGGAATATCCGTGATCGATACAATGTGAAAAAGGGGATGGATTACAAGGGTTCCATTTACGACGCAGCTCCGACATTCGAGTCCTATGGAGTCCCCCACGGTGACGGAGGTCTTATGAAGGCTGTTCCTGAGAAACACAGGAAATTTTTACAGGATCTTGTGTGGGTACACGAGGAGGAGGAAGTTGAGACTGGTGATCCCGAGATGAGCAGAACAAAGTTAATTGCTGTGCACGCAGGCCTACATT

Fln Alignment:

Contig9529___AFLRLLPPPPDGFSLSDTWKEYQKNEEREGWWSGEGYEEMHIQGRRWAGNIRDRYNVKKGMDYKGSIYDAAPTFESYGVPHGDGGLMKAVPEKHRKFLQDLVWVHEEEEVETGDPEMSRTKLIAVHAGL
A9NRK4_________________AFLRLLPPPPDSFSLSDTWKEFYKNEEREGWWSGEGYEEMHIQGRRWAGHIRDRYNVKKGMDYKGSIYDAAPTFESYGVAHGDGGLIKAVPEKHKKFLQDLVWVH-EEEVDTSDPEMSRTKLIAVHAGL

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
257	25			75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain