SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene9404

Length: 186 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene9404
GACTACGAAAAGCCCATTCATGAGGTACTGTTATTTCAGATTATTCTTGTATATAATGGCAGTCTCTCTAACACCTATTAGCTCCAAAGCTCATGAGAAGAGAAATAATTTTGCAGGTGATAAGAGACATGTCAAATGGCGGTGTGGATTACAGCTTTGAATGCATTGGAAATACAGATATCTTAT

Ace file of the UniGene biog3_v1.0_unigene9404 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene16201	1/2
SustainPine v2.0	sp_v2.0_unigene20859	1/2

Source	Descriptions	Term	Type	Identity
AutoFact	alcohol dehydrogenase-like 3 [Arabidopsis thaliana] sp\|A1L4Y2.1\|ADHL3_ARATH RecName: Full=Alcohol dehydrogenase-like 3 gb\|ABM06039.1\| At1g32780 [Arabidopsis thaliana] gb\|AEE31528.1\| alcohol dehydrogenase-like 3 [Arabidopsis thaliana]	-	-	57%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	73%
Blast2go	alcohol dehydrogenase-like 3	-	-	74%

Source	InterPros	Term	Type	Identity
Sma3	Aliphatic acid kinase, short-chain	IPR000890	-	-
Sma3	Legume lectin domain	IPR001220	-	-
Sma3	Alcohol dehydrogenase superfamily, zinc-type	IPR002085	-	-
Sma3	Alcohol dehydrogenase, zinc-type, conserved site	IPR002328	-	-
Sma3	Alcohol dehydrogenase, C-terminal	IPR013149	-	-
Sma3	Alcohol dehydrogenase GroES-like	IPR013154	-	-
Sma3	Alcohol dehydrogenase class III/S-(hydroxymethyl)glutathione dehydrogenase	IPR014183	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NZ44

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 99 aas, your sequence is shorter than subject: 61 - 405

Fln protein: LRKAHS*GTVISDYSCI*WQSL*HLLAPKLMRREIILQVIRDMSNGGVDYSFECIGNTDIL

Protein Length: 62

Fln nts: GACTACGAAAAGCCCATTCATGAGGTACTGTTATTTCAGATTATTCTTGTATATAATGGCAGTCTCTCTAACACCTATTAGCTCCAAAGCTCATGAGAAGAGAAATAATTTTGCAGGTGATAAGAGACATGTCAAATGGCGGTGTGGATTACAGCTTTGAATGCATTGGAAATACAGATATCTTAT

Fln Alignment:

Contig9404___ILQVIRDMSNGGVDYSFECIGNTDIL
A9NZ44_________________IQEVITEKSEGGVDYSFECIGNTDVL

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
14	33		66		0.997452
76	66			33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain