SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene9402

Length: 335 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene9402
TGGAGACTCATGCTAAGGTTGATATGCTAAAGCAGGGGATACCAGACCCATCTCTTCTGAATTCCCCTTCAGCTGGAATAGGTGCCTATTCACAAAGTTCAAATATAGTGTCTGACAGAGAGGAGCGGGACACTTTGCAGGATGATTCAACTGAGTTTTTGGCTGATCCAGTGTTCATTCACACAAAGTTGCGTGAACAGGAGTTTTCTTGGTACAATGTTTTGTGTTTGAGAAAAGCGCTTTCACTTTATTTCATTTGAAGGTGTCAGATGATTCAACAAAGATCCAGCTTGAGAGCTATACCTCAATGCTGAAGCAACTCCGTGATCAGGTGC

Ace file of the UniGene biog3_v1.0_unigene9402 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2966	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	Unassigned protein	-	-	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Blast2go	protein smg9	-	-	64%

Source	GOs	Term	Type	e value	Identity
Blast2go	plastid	GO:0009536	Cellular Component	0.0	64%

Source	InterPros	Term	Type	Identity
Sma3	Shikimate kinase	IPR000623	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	Carbohydrate kinase, thermoresistant glucokinase	IPR006001	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AEA1

Fln msg: Warning!, your query overlaps and the subject is separated, Distance to subject end: 49 aas, atg_distance in limit (1-15): atg_distance = 5, your sequence is shorter than subject: 104 - 236

Fln protein: MLKQGIPDPSLLNSPSAGIGAYSQSSNIVSDREERDTLQDDSTEFLADPVFIHTKLREQEFSWYNVLCLRKAxxxxxxLKVSDDSTKIQLESYTSMLKQLRDQV

Protein Length: 105

Fln nts: TGGAGACTCATGCTAAGGTTGAT_-_ATGCTAAAGCAGGGGATACCAGACCCATCTCTTCTGAATTCCCCTTCAGCTGGAATAGGTGCCTATTCACAAAGTTCAAATATAGTGTCTGACAGAGAGGAGCGGGACACTTTGCAGGATGATTCAACTGAGTTTTTGGCTGATCCAGTGTTCATTCACACAAAGTTGCGTGAACAGGAGTTTTCTTGGTACAATGTTTTGTGTTTGAGAAAAGCGxxxxxxxxxxxxxxxxxxTTGAAGGTGTCAGATGATTCAACAAAGATCCAGCTTGAGAGCTATACCTCAATGCTGAAGCAACTCCGTGATCAGGTGC

Fln Alignment:

Contig9402___VDMLKQGIPDPSLLNSPSAGIGAYSQSSNIVSDREERDTLQDDSTEFLADPVFIHTKLREQEFSWYNVLCLRKALSLYFxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxFTLFHLKVSDDSTKIQLESYTSMLKQLRDQV
D5AEA1_________________VDMLKQGIPDPSLLNSSSTGVGAYSQGSNMVSDREERDALQDDSTEFLADPVFIHTKLREQEFSWYNVLCLRKALSLYFxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxFYVLPLKVSDDSAKIQLESYTSMLKQLRDQV

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
242	25			75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain