SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene9387

Length: 572 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene9387
AATGTACAACGAAATAGAAAAGCAGAGGGTTCCTTTGACATTGATCTGCCAGATGCTGAAATGGGAAACGTGTGTACACGTTTCCCTGTTGAGCCAAGTGGTTATCTCCATATTGGGCATGCAAAGGCTGCTCTTTTAAACCAATACTTTGCTCAGAGGTATAAAGGGCGCTTAATCATACGCTTTGATGACACGAATCCTGCTAAAGAGAGTAATGAATTTGTTGAGAATATTCTAAATGATTTGGATACACTCGGTATCAAAGGAGAAGGACCCACATATACTTCAGATTATTTTCCGCAGTTAATGGAGATGGCTGAGAAACTAATATCTGAGGGAAAGTCCTATGTAGATGACACACCCCGAGAGCAGATGCAGAAGGAGAGAATGGATGGAATTGAGTCAGTGAATAGGAATAATAGCGTGGAGCAAAATATGGCTTTGTGGAAAGAAATGGTTGCTGGGTCTGAGAGGGGCAAGCAATGCTGTCTTAGAGGGAAGATGGATATGCAGGCTGCAAATAAGTCACTTAGGGATCCTGTTTATTATAGATGCAACACTACATCTACATT

Ace file of the UniGene biog3_v1.0_unigene9387 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1165	7/7

Source	Descriptions	Term	Type	Identity
AutoFact	Glutamyl-tRNA synthetase, cytoplasmic, putative n=1 Tax=Ricinus communis RepID=B9RFS6_RICCO	-	-	66%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Blast2go	glutamyl-trna synthetase	-	-	80%

Source	ECs	Term	Type	e value	Identity
Blast2go	Glutamine--tRNA ligase.	EC:6.1.1.18	-	0.0	80%

Source	KEGGs	Term	Type	Identity
Blast2go	Aminoacyl-tRNA biosynthesis	00970		80%
Blast2go	Metabolic pathways	01100		80%
Blast2go	Glutamate--tRNA ligase.	EC:6.1.1.17	-	80%

Source	KEGGs	Term	Identity
Blast2go	Porphyrin and chlorophyll metabolism	00860	80%
Blast2go	Aminoacyl-tRNA biosynthesis	00970	80%
Blast2go	Metabolic pathways	01100	80%
Blast2go	Biosynthesis of secondary metabolites	01110	80%

Source	GOs	Term	Type	Identity
Blast2go	glutamyl-tRNA aminoacylation	GO:0006424	Biological Process	80%
Blast2go	glutamine-tRNA ligase activity	GO:0004819	Molecular Function	80%
Blast2go	glutamate-tRNA ligase activity	GO:0004818	Molecular Function	80%
Blast2go	ATP binding	GO:0005524	Molecular Function	80%
Blast2go	plastid	GO:0009536	Cellular Component	80%

Source	InterPros	Term	Type	Identity
Sma3	Aminoacyl-tRNA synthetase, class I, conserved site	IPR001412	-	-
Sma3	Glutamyl-tRNA synthetase, class Ib, archaeal/eukaryotic cytosolic	IPR004526	-	-
Sma3	Glutamyl/glutaminyl-tRNA synthetase, class Ib	IPR000924	-	-
Sma3	Glutathione S-transferase, C-terminal-like	IPR010987	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LRU5

Fln msg: Distance to subject end: 345 aas, your sequence is shorter than subject: 190 - 728

Fln protein: NVQRNRKAEGSFDIDLPDAEMGNVCTRFPVEPSGYLHIGHAKAALLNQYFAQRYKGRLIIRFDDTNPAKESNEFVENILNDLDTLGIKGEGPTYTSDYFPQLMEMAEKLISEGKSYVDDTPREQMQKERMDGIESVNRNNSVEQNMALWKEMVAGSERGKQCCLRGKMDMQAANKSLRDPVYYRCNTTST

Protein Length: 191

Fln nts: AATGTACAACGAAATAGAAAAGCAGAGGGTTCCTTTGACATTGATCTGCCAGATGCTGAAATGGGAAACGTGTGTACACGTTTCCCTGTTGAGCCAAGTGGTTATCTCCATATTGGGCATGCAAAGGCTGCTCTTTTAAACCAATACTTTGCTCAGAGGTATAAAGGGCGCTTAATCATACGCTTTGATGACACGAATCCTGCTAAAGAGAGTAATGAATTTGTTGAGAATATTCTAAATGATTTGGATACACTCGGTATCAAAGGAGAAGGACCCACATATACTTCAGATTATTTTCCGCAGTTAATGGAGATGGCTGAGAAACTAATATCTGAGGGAAAGTCCTATGTAGATGACACACCCCGAGAGCAGATGCAGAAGGAGAGAATGGATGGAATTGAGTCAGTGAATAGGAATAATAGCGTGGAGCAAAATATGGCTTTGTGGAAAGAAATGGTTGCTGGGTCTGAGAGGGGCAAGCAATGCTGTCTTAGAGGGAAGATGGATATGCAGGCTGCAAATAAGTCACTTAGGGATCCTGTTTATTATAGATGCAACACTACATCTACATT

Fln Alignment:

Contig9387___KAEGSFDIDLPDAEMGNVCTRFPVEPSGYLHIGHAKAALLNQYFAQRYKGRLIIRFDDTNPAKESNEFVENILNDLDTLGIKGEGPTYTSDYFPQLMEMAEKLISEGKSYVDDTPREQMQKERMDGIESVNRNNSVEQNMALWKEMVAGSERGKQCCLRGKMDMQAANKSLRDPVYYRCNTTS
B8LRU5_________________KAEGSFDIDLPDAEMGNVCTRFPPEPSGYLHIGHAKAALLNQYFAQRYKGRLIIRFDDTNPAKESNEFVENILNDLDTLGIKGEGPTYTSDYFPQLMEMAEKMISEGKSYIDDTPREQMQKERMDGIESVNRNNTVEQNMALWKEMVAGTERGKQCCLRAKMDMQAANKSLRDPVYYRCNPIS

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
35	33		66		0.997452
39		66		33	0.997452
49		66		33	0.997452
108	66			33	0.997452
212	33		66		0.997452
320	33		66		0.997452
377	66		33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain