SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene9363

Length: 1002 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene9363

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene16233	15/20
SustainPine v2.0	sp_v2.0_unigene17684	5/20

Source	Descriptions	Term	Type	Identity
AutoFact	RNA recognition motif-containing protein [Arabidopsis thaliana] gb\|AED98140.1\| RNA recognition motif-containing protein [Arabidopsis thaliana]	-	-	57%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Blast2go	heterogeneous nuclear	-	-	76%

Source	InterPros	Term	Type	e value	Identity
Sma3	RNA recognition motif domain	IPR000504	-	0.0	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	0.0	-

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: D5AA31

Fln msg: Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 218 - 265

Fln protein: MPMPYHAGQPRVFPVVRLRGLPFNCSESDICEFFAGLDVVDALLVQKQGRFSGEGFVVFRNPMQVDFALQRDRQNMGRRYIEVFRCKKQDYYNAVAAEVGEAKVGDDAAPPPSYSKGSSEKDHMDHTGFLKLRGLPFSVSKRDIVEFFKEYDLKEKNVHIVTHSDGRATGEAFVEFLSAADSKDAMRKDKMTIGTRYVELFPSSQEESSRAASRSRH*

Protein Length: 219

Fln nts: AATGTAGTAGCGGGCGGGGAAAGGGAAATCAAGTCAATCACCTGGGCAGCACTTGGAAAACATGTTTTCCAGAGGGACTATGTTGGGAGGCGGGGGTATGTCTGAAGGGTTCGAGGTCAGCTCAAAGAGACAGCGGATGATAGACCAGGAACCGTACTTCTCAGGTTCGAGTGGGTTCGGTCCCTACAGTGGTCTTGGCACTGT_-_ATGCCGATGCCCTATCACGCAGGCCAGCCTCGAGTTTTTCCGGTGGTTCGTTTGCGGGGTCTTCCTTTCAATTGCAGCGAGAGCGACATTTGTGAGTTCTTTGCGGGATTGGATGTCGTGGATGCCTTGCTAGTGCAAAAACAGGGCCGTTTCTCTGGTGAAGGTTTTGTTGTTTTCCGCAATCCGATGCAAGTTGATTTTGCTTTGCAGCGGGATAGACAGAACATGGGGCGCAGGTACATTGAGGTCTTTCGCTGCAAAAAGCAGGACTACTATAATGCTGTTGCAGCCGAAGTCGGTGAAGCCAAAGTGGGGGATGATGCTGCTCCACCGCCTAGCTACTCGAAGGGTTCTTCAGAGAAGGATCATATGGATCATACTGGCTTTCTGAAGCTCAGAGGCCTTCCTTTCTCGGTGTCGAAGAGGGACATCGTTGAGTTTTTCAAGGAATATGATCTAAAAGAGAAAAATGTACACATTGTAACTCATTCCGATGGGAGAGCCACAGGCGAAGCCTTTGTGGAATTTCTAAGTGCCGCTGATTCAAAGGACGCTATGAGGAAAGACAAAATGACGATTGGCACCAGATATGTAGAACTTTTCCCTTCAAGTCAGGAAGAAAGTAGTCGTGCAGCGTCGAGATCTAGGCATTAAGTAGTTTGTTTCAAAAGAATTTTAAAAGGTGTGGTATGCCTTGACAGATCTTTTCACTGCATGTTTTATTGCACATAGAAGTTTAACTTCTAGACTGTGATATTTTGAGAGCTATGGAGCAAGAAAAGATAAAGGTGTTTGTAG

Fln Alignment:

Contig9363___MPMPYHAGQPRVFPVVRLRGLPFNCSESDICEFFAGLDVVDALLVQKQGRFSGEGFVVFRNPMQVDFALQRDRQNMGRRYIEVFRCKKQDYYNXXXXXXXXXXXXDDAAPPPSYSKGSSEKDHMDHTGFLKLRGLPFSVSKRDIVEFFKEYDLKEKNVHIVTHSDGRATGEAFVEFLSAADSKDAMRKDKMTIGTRYVELFP
D5AA31_________________MPMPYLAGQPRVFPVVRLRGLPFNCSESDICEFFAGLDVVDALLVHKQGRFSGEGFVLFRSPMQVDFALQRDRQNMGRRYIEVFRCKKQDYYNAVAAEVNEPKAGDDAAPPSGYSKGSSEKDHMEHTGFLKLRGLPFSVSRRDIVEFFKDYQLKEKNVHIVTHSDGRATGEAFVEFSSAADSKDAMSKDKMTIGTRYVELFP

SNPs (tot: 16)

Position	A %	C %	G %	T %	Probability
325	25	75			0.996473
326	25		75		0.996473
329			75	25	0.996473
394	14		71	14	0.984337
399	85			14	0.993533
616		33		66	0.997452
732	14		85		0.993533
747	14		85		0.993533
800		14		85	0.993533
801	14		85		0.993533
803	85			14	0.993533
897	25		75		0.996473
898		25		75	0.996473
901			75	25	0.996473
962		20	80		0.995493
964		50		50	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain