SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene9334

Length: 438 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene9334
GGCGATCTCGTGGGCATTGAATTCAGTGGTAATACGAGTTTTAATTCAGCAAGCAGAAGGCACATGTGCCAGCTCGTCTCAAAAATGAATGGGAAGCGCGCATTTCTTGTCGACACATTGGCCCTGGTCAGAAGGTTCGAAGCTCAAGGTATCCCTTCTAATCAAGCTGAGGCAATAACAGCAGTAATCACTGAAGTTCTGAATGATAGCCTGGAAAATGTAGCACAATCATTTGTTTCAAAACCAGAAATGCAAACAAGTGCGATGATGCAAGAAACTGCTCTTTCAAAGTTCAAGGCTGAAGTTCAGAGTTCTCAGGACCACCATTTCTCTTTGCTACAACATGAGACTGAAAAATTACGGACTGCCATAGACAAAATGCAGAGTGAATTGAGATATGAGATTGACAAAGTGACAGCTAGCCAACGACTAGACTTG

Ace file of the UniGene biog3_v1.0_unigene9334 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene25705	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	metal ion binding	-	-	74%
FL-Next	tr=Predicted protein; subsp. trichocarpa).	-	-	74%
Blast2go	coiled-coil domain-containing protein 90b	-	-	86%

Source	GOs	Term	Type	Identity
Blast2go	metal ion binding	GO:0046872	Molecular Function	86%
Blast2go	vacuolar membrane	GO:0005774	Cellular Component	86%
Blast2go	mitochondrion	GO:0005739	Cellular Component	86%

Source	InterPros	Term	Type	e value	Identity
Sma3	Coiled-coil domain-containing protein 90	IPR012439	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B9HRG4

Fln msg: Distance to subject end: 66 aas, your sequence is shorter than subject: 146 - 231

Fln protein: GDLVGIEFSGNTSFNSASRRHMCQLVSKMNGKRAFLVDTLALVRRFEAQGIPSNQAEAITAVITEVLNDSLENVAQSFVSKPEMQTSAMMQETALSKFKAEVQSSQDHHFSLLQHETEKLRTAIDKMQSELRYEIDKVTASQRLDL

Protein Length: 147

Fln nts: GGCGATCTCGTGGGCATTGAATTCAGTGGTAATACGAGTTTTAATTCAGCAAGCAGAAGGCACATGTGCCAGCTCGTCTCAAAAATGAATGGGAAGCGCGCATTTCTTGTCGACACATTGGCCCTGGTCAGAAGGTTCGAAGCTCAAGGTATCCCTTCTAATCAAGCTGAGGCAATAACAGCAGTAATCACTGAAGTTCTGAATGATAGCCTGGAAAATGTAGCACAATCATTTGTTTCAAAACCAGAAATGCAAACAAGTGCGATGATGCAAGAAACTGCTCTTTCAAAGTTCAAGGCTGAAGTTCAGAGTTCTCAGGACCACCATTTCTCTTTGCTACAACATGAGACTGAAAAATTACGGACTGCCATAGACAAAATGCAGAGTGAATTGAGATATGAGATTGACAAAGTGACAGCTAGCCAACGACTAGACTTG

Fln Alignment:

Contig9334___SGNTSF-NSASRRHMCQLVSKMNGKRAFLVDTLALVRRFEAQGIPSNQAEAITAVITEVLNDSLENVAQSFVSKPEMQTSAMMQETALSKFKAEVQSSQDHHFSLLQHETEKLRTAIDKMQSELRYEIDKVTASQRLDL
B9HRG4_________________SSSSSFGNRFDYRHISQLVRPNNNKRAFLVDTLALVRGLESQGVPSKQAEAITAAITEVLNDSLENVAYSFVSKAEMQKSEMIQDSNLSKFKSEVQSSQEHHFSLLQRETEKLRGDIDKMRSELRYEIDKVTAGQRLDL

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
28	33	66			0.997452
30			33	66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain