SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene9171

Length: 1104 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene9171

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1308	15/15

Source	Descriptions	Term	Type	Identity
AutoFact	Chloroplast homogentisate phytyltransferase n=2 Tax=apioid superclade RepID=B2Z8W9_CORSA	-	-	61%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	23%
Blast2go	homogentisate phytyltransferase vte2-1	-	-	78%

Source	ECs	Term	Type	e value	Identity
Blast2go	Chlorophyll synthase.	EC:2.5.1.62	-	0.0	78%

Source	KEGGs	Term	Identity
Blast2go	Porphyrin and chlorophyll metabolism	00860	78%
Blast2go	Metabolic pathways	01100	78%
Blast2go	Biosynthesis of secondary metabolites	01110	78%

Source	GOs	Term	Type	e value	Identity
Blast2go	chlorophyll synthetase activity	GO:0046408	Molecular Function	0.0	78%
Blast2go	integral to membrane	GO:0016021	Cellular Component	0.0	78%

Source	InterPros	Term	Type	Identity
Sma3	UbiA prenyltransferase family	IPR000537	-	-
Sma3	Pyridoxal phosphate-dependent decarboxylase	IPR002129	-	-
Sma3	2-oxo acid dehydrogenase, lipoyl-binding site	IPR003016	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PT82

Fln msg: your sequence is shorter than subject: 259 - 388

Fln protein: NVPALFMNIYIVGLNQISDIAIDKVNKPYLPLASGEFSVGAAVVLVTAFAFMSLGMGFMFGSAPLILALFISFLLGTAYSINLPFLRWKRSALAAASCILCVRAVVVQIAFYLHIQSSVYGRPATLTKPLIFATAFMCFFSVVIALFKDIPDVDGDRIFGIQSFTVRLGPKRVFWLCIYLLLAAYTVAMIMGAVSSFMWNKLAMVSGHAVLATVLWRKAQAIDLKSKVAITSFTCLYGSFLCRIFTYSIYEMMEIDSL*

Protein Length: 260

Fln nts: AATGTACCAGCTCTCTTTATGAATATTTATATCGTGGGTTTAAATCAAATATCTGACATTGCAATAGACAAGGTCAACAAGCCATATCTTCCGCTTGCTTCTGGTGAATTTTCTGTTGGAGCTGCTGTGGTGCTTGTGACAGCCTTTGCTTTCATGAGTCTTGGTATGGGTTTTATGTTTGGATCAGCACCTTTGATTTTGGCTCTCTTCATAAGTTTTCTACTTGGAACTGCATATTCAATCAATCTGCCATTTTTAAGATGGAAACGGTCTGCTTTGGCTGCTGCAAGTTGCATCTTATGTGTGAGGGCAGTCGTAGTTCAAATTGCCTTTTACTTGCACATACAGAGTTCTGTTTACGGGAGACCTGCAACCTTGACCAAGCCTCTGATATTTGCTACAGCTTTTATGTGCTTCTTCTCAGTTGTGATTGCTCTTTTTAAGGATATACCAGATGTGGATGGAGACAGAATCTTTGGCATTCAATCTTTCACTGTCCGTCTGGGTCCAAAGCGGGTGTTTTGGCTCTGTATATATTTACTACTGGCTGCATACACTGTTGCTATGATTATGGGAGCTGTCTCTTCATTCATGTGGAACAAACTTGCAATGGTGTCCGGACATGCTGTGCTAGCTACTGTTCTTTGGCGCAAAGCGCAAGCTATAGACCTCAAGAGCAAAGTGGCAATTACCTCTTTTACATGTTTATATGGAAGCTTTTTATGCAGAATATTTACTTATTCCATTTATGAGATGATGGAAATTGATTCTCTGTAA___TTTACTTATTTTATATTTGTAATCTTCATAAACATTGGGGCATTTATTGACTTGCAACTATAAAATGCCTACTCTGGTCTGCTTTACTCTGAAGTCTCCTAAGAAGATCTGGAGCGGAAATATAGGATGTTTTCATTGTGGTTGATGGACTGTGTTTGGCAGAGTTAATAAGAGATTCTGGTTGATGGCTACTCTTGAAAAACCAGTCACCAACATTATAGAAGGTCATTTACTTGGCTCGCTATACGTGAATGCCCGTTGTTTTTACTATTGGTCATTGTTTCAATACATATTGACATCCTGGTTGTTTCAGTACATCTTTTTTCG

Fln Alignment:

Contig9171___YIVGLNQISDIAIDKVNKPYLPLASGEFSVGAAVVLVTAFAFMSLGMGFMFG-----SAPLILALFISFLLGTAYSINLPFLRWKRSA----LAAASCILCVRAVVVQIAFYLHIQSSVYGRPATLTKPLIFATAFMCFFSVVIALFKDIPDVDGDRIFGIQSFTVRLGPKRVFWLCI
C0PT82_________________YTQTLNDWYDREIDAINEPYRPIPSGAISESEVITQIWVLLLGGLGLAALLDVWAGHTVPSVFYIAVGGSL-LSYIYSAPPLKLKQNGWIGNFALGSSYICLPWWAGQALF------------GTLKPDIMVLTVLYSIAGLGIAIINDFKSIEGDRAMGLQSLPVAFGVDTAKWICV

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
643		14		85	0.993533
644	14		85		0.993533
1077	66		33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain