SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene9163

Length: 686 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene9163 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene7523	13/15
SustainPine v2.0	sp_v2.0_unigene78575	1/15

Source	Descriptions	Term	Type	Identity
AutoFact	Ubiquitin-conjugating enzyme E2 variant 1C n=3 Tax=Eukaryota RepID=D3PJZ2_9MAXI	-	-	94%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Blast2go	ubiquitin-conjugating enzyme spm2	-	-	92%

Source	ECs	Term	Type	e value	Identity
Blast2go	Ubiquitin--protein ligase.	EC:6.3.2.19	-	0.0	92%

Source	GOs	Term	Type	Identity
Blast2go	post-translational protein modification	GO:0043687	Biological Process	92%
Blast2go	postreplication repair	GO:0006301	Biological Process	92%
Blast2go	protein binding	GO:0005515	Molecular Function	92%
Blast2go	ubiquitin-protein ligase activity	GO:0004842	Molecular Function	92%
Blast2go	UBC13-MMS2 complex	GO:0031372	Cellular Component	92%

Source	InterPros	Term	Type	e value	Identity
Sma3	Ubiquitin-conjugating enzyme/RWD-like	IPR016135	-	0.0	-
Sma3	Ubiquitin-conjugating enzyme, E2	IPR000608	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
129	25			75	0.996473
132		75	25		0.996473
567	10		90		0.90298
569		90	10		0.90298
570		90		10	0.90298
586	10	90			0.90298
590			90	10	0.90298
618	50	50			1.0

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain