SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene9161

Length: 2300 nt

UniGene Fasta

>biog3_v1.0_unigene9161
ACGGAGGCCGAGTCGAGAGAGGCGCGCAGTAGTCGAGGCGGTGCTGCAGAGGTCTTCAGCTTTAAGCATAACCAAGCGAAGGCTAACAACTCCCAGGCTCCGGCTCCCGATCTCATCCCGTTTGTGGGATTCGATCGCTGAACCTCGGCTTCGAATAGATCTGTGCAAACCCCATCGACTAGATCGCTGAATCTTGAAAAACAGTAGGGTATTTTGCCGTGTTTTTATTTTGAAGGTTCCGGAGAAGATTAGTGTTAGGGTTTGAGATAGGTCTCTTTAGGCTTTTTAGGGTTTGAAGGTGCTGATTTCAGGTTTGATTACTTATTTGAAGCGTTGGGTTGTTGTGAGGGTGAAAAATTCTAGGAATGCGGCAAGATGTGTGTGTGGCTTGAAATTTCTGACTCGCTTAAGGACGAGCCGGCTGCGGGGAACTCCGCTGCAGGTTTGCCACGGGGCTATGGAGAGGTTTTCTGGAATGAGATGATTTGCCTCGAGATTGTGCTGAGGAAGCTGCTTGACGATGGCTGAATAGTCTGGATTCGATCCGGCTCTCTGAGAAGGCTGTGGAACTAAAGAAAAGAAGAGCAGAGGCGCCGTGAATAGAACACAGCACTGAGGCTGATTAGTGATTTGTTAAAAAGATGGAGATAAAGCCTAATGTTCTGCTGGGAAAGTTTGAACTAGGGAAGCTCCTCGGGCAAGGAACCTTTGCTAAGGTTTACCATGCGAGGAATGTAAACACGGGCGAGAACGTCGCGATTAAAGTGATGGACAAGGCGAAGATTATGAAGGTCGGCATGATGGAGCAAATCAAGCGTGAGATATCTGTAATGAGGCTGGTTCGGCATCCGAACATTGTTGAACTTTACGAGGTCATGGCGAGCAAGACGAAGATTTATTTTGTGATGGAATATGTCAGAGGCGGAGAGCTCTTCAACAAGGTTGCCAAGGGGAGATTAAAGGAGGATGCCGCGAGGAAATATTTTCAGCAGCTGATGAGTGCCGTTGATTTTTGTCACAGCCGGGGGGTTTACCACCGCGATTTGAAGCCGGAGAACCTGTTGTTGGACGAGAACGAAAATCTGAAGGTCTCTGACTTCGGGCTCAGCGCGCTGCCCGAGCAGTTCAAGCAGGACGGCCTCCTGCATACGACCTGCGGCACACCGGCCTATGTCGCGCCGGAGATCATCGCCAAGAAGGGCTACGACGGGGCCAAGGCCGACATCTGGTCGTGCGGTGTCATACTGTTCGTTCTCATGGCGGGCTACCTACCTTTTCAGGACGCGAATCTCATGGCTATGTATAGAAAGATCTATAAAGGCGACTTCAAGTGCCCGCCGTGGTTTTCGCCTTCGGTTGTGAAGATCGTTTCAAAGCTCCTGGACCCTAACCCGAGGACAAGAATCGGGATCCCCAGGCTCATGGAGATCCCCTGGTTCAGGAAAGGCTTCAAGGCAGGCCGGCCGGTTTCCCGTGACGATGTAGACGACGACATCGGCCTCGCCGATGTTGATTCCGCTTTTGAAAACCGTGAAGCCACGAAAGCCGACCAAGAATTGAAATCCAAGCCCACCCTGCTCAATGCCTTCGATATCATTTCTTTCTCGCCTGGATTTAATCTTTCCGGGCTCTTCAAGGACAAGGCTGTGAAGCAGGAGTCGAGATTCACGTCGAATCAATCGGCGTCGAGCATAGTGTCGAAGCTGGAGGAGTTTGCGAAGCTGTTTCGGTTCAGCGTAAAGAAGAAAGGAGACTCCAAGGTCAAGCTGGAGGGGTCCGAGCAGGGCCGCAAGGGACACCTAGCAATTGCTGCCGAGATATTCGAGGTTACGCCCTCTCTGTTCGTCGTTGAGGTCAGCAAGGCAGGGGGCGACACGCTGGAATACAACAAGTTTTGCAACCAGGAGCTCAGGCCAGGCCTCAAAGACATCGTGATGGCATGGCACGAAGACGGGCAGTAGATGATCATTGATTAGTGTGTTTTCATTTTTGTGATTGTTCTGTACAAAATTGTGTCTCAGGTTTTCATCGACAAAATAAATGATTCCATTGACCTGTGAATTCAATTGTTTCGTCGTATGTTTTAGGGCATCTAATTTACTGTTGGCATTTTGTGCTTGTAACGAATTTATTTGAAAGGCATCCGCTGTGTTGGTTCTGAATCAAAACTGGGTAATATGTTCTGAAGTATGTGTTGAAAAAGTTTCCACTGTGTCTCTCAATTAAATTTGGGAAATCCTGTGTTCAGGTAAAAAAGTTGTGAGAAAATTTGGGAAATTCGTTTTCATGTAAAACATTGT

Ace file of the UniGene biog3_v1.0_unigene9161

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene17610	101/103
SustainPine v2.0	sp_v2.0_unigene31946	1/103

Source	Descriptions	Term	Type	Identity
AutoFact	CBL-interacting protein kinase 16 n=2 Tax=Vitis vinifera RepID=C4P7W5_VITVI	-	-	65%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Blast2go	serine-threonine kinase	-	-	80%

Source	GOs	Term	Type	e value	Identity
Blast2go	transferase activity	GO:0016740	Molecular Function	0.0	80%

Source	InterPros	Term	Type	Identity
Sma3	NAF domain	IPR004041	-	-
Sma3	NAF/FISL domain	IPR018451	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NXS5

Fln msg: your sequence is longer than subject: 440 - 373

Fln protein: MEIKPNVLLGKFELGKLLGQGTFAKVYHARNVNTGENVAIKVMDKAKIMKVGMMEQIKREISVMRLVRHPNIVELYEVMASKTKIYFVMEYVRGGELFNKVAKGRLKEDAARKYFQQLMSAVDFCHSRGVYHRDLKPENLLLDENENLKVSDFGLSALPEQFKQDGLLHTTCGTPAYVAPEIIAKKGYDGAKADIWSCGVILFVLMAGYLPFQDANLMAMYRKIYKGDFKCPPWFSPSVVKIVSKLLDPNPRTRIGIPRLMEIPWFRKGFKAGRPVSRDDVDDDIGLADVDSAFENREATKADQELKSKPTLLNAFDIISFSPGFNLSGLFKDKAVKQESRFTSNQSASSIVSKLEEFAKLFRFSVKKKGDSKVKLEGSEQGRKGHLAIAAEIFEVTPSLFVVEVSKAGGDTLEYNKFCNQELRPGLKDIVMAWHEDGQ*

Protein Length: 441

Fln nts: ACGGAGGCCGAGTCGAGAGAGGCGCGCAGTAGTCGAGGCGGTGCTGCAGAGGTCTTCAGCTTTAAGCATAACCAAGCGAAGGCTAACAACTCCCAGGCTCCGGCTCCCGATCTCATCCCGTTTGTGGGATTCGATCGCTGAACCTCGGCTTCGAATAGATCTGTGCAAACCCCATCGACTAGATCGCTGAATCTTGAAAAACAGTAGGGTATTTTGCCGTGTTTTTATTTTGAAGGTTCCGGAGAAGATTAGTGTTAGGGTTTGAGATAGGTCTCTTTAGGCTTTTTAGGGTTTGAAGGTGCTGATTTCAGGTTTGATTACTTATTTGAAGCGTTGGGTTGTTGTGAGGGTGAAAAATTCTAGGAATGCGGCAAGATGTGTGTGTGGCTTGAAATTTCTGACTCGCTTAAGGACGAGCCGGCTGCGGGGAACTCCGCTGCAGGTTTGCCACGGGGCTATGGAGAGGTTTTCTGGAATGAGATGATTTGCCTCGAGATTGTGCTGAGGAAGCTGCTTGACGATGGCTGAATAGTCTGGATTCGATCCGGCTCTCTGAGAAGGCTGTGGAACTAAAGAAAAGAAGAGCAGAGGCGCCGTGAATAGAACACAGCACTGAGGCTGATTAGTGATTTGTTAAAAAG_-_ATGGAGATAAAGCCTAATGTTCTGCTGGGAAAGTTTGAACTAGGGAAGCTCCTCGGGCAAGGAACCTTTGCTAAGGTTTACCATGCGAGGAATGTAAACACGGGCGAGAACGTCGCGATTAAAGTGATGGACAAGGCGAAGATTATGAAGGTCGGCATGATGGAGCAAATCAAGCGTGAGATATCTGTAATGAGGCTGGTTCGGCATCCGAACATTGTTGAACTTTACGAGGTCATGGCGAGCAAGACGAAGATTTATTTTGTGATGGAATATGTCAGAGGCGGAGAGCTCTTCAACAAGGTTGCCAAGGGGAGATTAAAGGAGGATGCCGCGAGGAAATATTTTCAGCAGCTGATGAGTGCCGTTGATTTTTGTCACAGCCGGGGGGTTTACCACCGCGATTTGAAGCCGGAGAACCTGTTGTTGGACGAGAACGAAAATCTGAAGGTCTCTGACTTCGGGCTCAGCGCGCTGCCCGAGCAGTTCAAGCAGGACGGCCTCCTGCATACGACCTGCGGCACACCGGCCTATGTCGCGCCGGAGATCATCGCCAAGAAGGGCTACGACGGGGCCAAGGCCGACATCTGGTCGTGCGGTGTCATACTGTTCGTTCTCATGGCGGGCTACCTACCTTTTCAGGACGCGAATCTCATGGCTATGTATAGAAAGATCTATAAAGGCGACTTCAAGTGCCCGCCGTGGTTTTCGCCTTCGGTTGTGAAGATCGTTTCAAAGCTCCTGGACCCTAACCCGAGGACAAGAATCGGGATCCCCAGGCTCATGGAGATCCCCTGGTTCAGGAAAGGCTTCAAGGCAGGCCGGCCGGTTTCCCGTGACGATGTAGACGACGACATCGGCCTCGCCGATGTTGATTCCGCTTTTGAAAACCGTGAAGCCACGAAAGCCGACCAAGAATTGAAATCCAAGCCCACCCTGCTCAATGCCTTCGATATCATTTCTTTCTCGCCTGGATTTAATCTTTCCGGGCTCTTCAAGGACAAGGCTGTGAAGCAGGAGTCGAGATTCACGTCGAATCAATCGGCGTCGAGCATAGTGTCGAAGCTGGAGGAGTTTGCGAAGCTGTTTCGGTTCAGCGTAAAGAAGAAAGGAGACTCCAAGGTCAAGCTGGAGGGGTCCGAGCAGGGCCGCAAGGGACACCTAGCAATTGCTGCCGAGATATTCGAGGTTACGCCCTCTCTGTTCGTCGTTGAGGTCAGCAAGGCAGGGGGCGACACGCTGGAATACAACAAGTTTTGCAACCAGGAGCTCAGGCCAGGCCTCAAAGACATCGTGATGGCATGGCACGAAGACGGGCAGTAG___ATGATCATTGATTAGTGTGTTTTCATTTTTGTGATTGTTCTGTACAAAATTGTGTCTCAGGTTTTCATCGACAAAATAAATGATTCCATTGACCTGTGAATTCAATTGTTTCGTCGTATGTTTTAGGGCATCTAATTTACTGTTGGCATTTTGTGCTTGTAACGAATTTATTTGAAAGGCATCCGCTGTGTTGGTTCTGAATCAAAACTGGGTAATATGTTCTGAAGTATGTGTTGAAAAAGTTTCCACTGTGTCTCTCAATTAAATTTGGGAAATCCTGTGTTCAGGTAAAAAAGTTGTGAGAAAATTTGGGAAATTCGTTTTCATGTAAAACATTGT

Fln Alignment:

Contig9161___MEIKPNVXXXXXXXXXXXXXXTFAKVYHARNVNTGENVAIKVMDKAKIMKVGMMEQIKREISVMRLVRHPNIVELYEVMASKTKIYFVMEYVRGGELFNKVAKGRLKEDAARKYFQQLMSAVDFCHSRGVYHRXXXXXXXXXXXXXXXXVSDFGLSALPEQFKQDGLLHTTCGTPAYVAPEIIAKKGYDGAKADIWSCGVILFVLMAGYLPFQDANLMAMYRKIYKGDFKCPPWFSPSVVKIVSKLLDPNPRTRIGIPRLMEIPWFRKGFKAGRPVSRXXXXXXXXXXXXXSAFENREATKADQELKSKPTLLNAFDIISFSPGFNLSGLFKDKAVKQESRFTSNQSASSIVSKLEEFAKLFRFSVKKK
A9NXS5_________________MEIKPNVLLGKYELGKLLGQGTFAKVYYARNVKTGESVAIKVMDKAKIMKVGMMEQIKREISVMRLVRHPNIVELYEVMASKTKIYFVMEYVRGGELFNKVAKGRLKEDAARKYFQQLMSAVDFCHSRGVYHRDLKPENLLLDENENLKVSDFGLSALPEQFKQDGLLHTTCGTPAYVAPEIIAKKGYDGAKADIWSCGVILFVLMAGYLPFQDANLMAMYRKIYKGEFKCPPWFPSSVVKFVSRLLDPNPRTRITIPRLMEVPWFRKGFKADRPVSRDDLDDDIGLVDVDSAFETREASKADQDLKSKPALLNAFDIISFSPGFNLSGLFKDKAVKQESRFTSTQSASSIMSKLEEVAKLFRFSVKKK

SNPs (tot: 60)

Position	A %	C %	G %	T %	Probability
36	66			33	0.997452
60	25	75			0.996473
61	25			75	0.996473
63			25	75	0.996473
64	75			25	0.996473
79	75		25		0.996473
247	14		85		0.993533
250			14	85	0.993533
251	85			14	0.993533
275	12	87			0.992554
302		87		12	0.992554
321	11	88			0.923564
341	10		20		0.999998
342	10		90		0.90298
502	11		88		0.923564
507			88	11	0.923564
509	88			11	0.923564
568	14		85		0.993533
569	85	14			0.993533
571		85		14	0.993533
604	28	14	57		1.0
606	85			14	0.993533
607		87		12	0.992554
620		66		33	1.0
642	14		85		0.993533
646			85	14	0.993533
887	78			21	1.0
888			76	23	1.0
897	12			87	0.992554
898		12		87	0.992554
900		12		62	1.0
901	12			87	0.992554
920		20	80		0.995493
922			80	20	0.995493
923			75	25	0.996473
1370	33		66		0.997452
1371	33			66	0.997452
1373			33	66	0.997452
1374		66		33	0.997452
1378			85	14	0.993533
1379		85	14		0.993533
1382	14	85			0.993533
1480		80		20	0.995493
1547	20		80		0.995493
1548		80		20	0.995493
1549		80	20		0.995493
1550			80	20	0.995493
1558	60	40			1.0
1585		40		60	1.0
1627		50		50	1.0
1679		85		14	0.993533
1687	12		87		0.992554
1688	12			87	0.992554
1689		87		12	0.992554
1691	87			12	0.992554
1934	11		88		0.923564
1936			88	11	0.923564
1976		20		80	0.995493
1978			80	20	0.995493
2147		66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain