SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene9089

Length: 424 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene9089
ATCCGAAGGACGATGAAGATCGGGCCAAGGCATCCACTGCACCGCTGAGTTCTTCGAAAAATGCCAGGAAAACAGTGGGAACAGAGAAGCAGAAAGCAAGCACATCGACATCCAGTAGAATGGAAGGGAAGGAATCTACTAAGCAGTCCGAAGAACAATCTCCTTGCACTTCTCTGAAGCGGCCTCTTGTATGGATAGACTTGGAAATGACTGGTTTAAATGTTGAGGATGACAGAATATTAGAGATTGCTTGTATCATTACCGATGGACAATTGGATAAAACAGTCGAGGGCCCATACCTGATAATTAACCAGTCAGAAGAATGCCTGGCAAGAATGAATGAGTGGTGCCAGGATCATCATTCCGCCAGTGGGCTGGTAGAAGAAGTTCGAAAAAGCAAAGTAACGGAGCAAGAAGCTACATT

Ace file of the UniGene biog3_v1.0_unigene9089 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene18048	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	oligoribonuclease [Arabidopsis thaliana] sp\|Q9ZVE0.2\|ORN_ARATH RecName: Full=Oligoribonuclease gb\|AAL36387.1\| unknown protein [Arabidopsis thaliana] gb\|AAN71962.1\| unknown protein [Arabidopsis thaliana] gb\|AEC07912.1\| oligoribonuclease [Arabidopsis thalia	-	-	62%
FL-Next	sp=Oligoribonuclease; Arabidopsis thaliana (Mouse-ear cress).	-	-	57%
Blast2go	oligoribonuclease	-	-	71%

Source	InterPros	Term	Type	Identity
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Retrotransposon gag protein	IPR005162	-	-
Sma3	Exonuclease	IPR006055	-	-
Sma3	Exonuclease, RNase T/DNA polymerase III	IPR013520	-	-
Sma3		IPR015706	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: sp_plants

Fln subject: Q9ZVE0

Fln msg: Distance to subject end: 97 aas, your sequence is shorter than subject: 101 - 222

Fln protein: MEGKESTKQSEEQSPCTSLKRPLVWIDLEMTGLNVEDDRILEIACIITDGQLDKTVEGPYLIINQSEECLARMNEWCQDHHSASGLVEEVRKSKVTEQEAT

Protein Length: 102

Fln nts: ATCCGAAGGACGATGAAGATCGGGCCAAGGCATCCACTGCACCGCTGAGTTCTTCGAAAAATGCCAGGAAAACAGTGGGAACAGAGAAGCAGAAAGCAAGCACATCGACATCCAGTAGA_-_ATGGAAGGGAAGGAATCTACTAAGCAGTCCGAAGAACAATCTCCTTGCACTTCTCTGAAGCGGCCTCTTGTATGGATAGACTTGGAAATGACTGGTTTAAATGTTGAGGATGACAGAATATTAGAGATTGCTTGTATCATTACCGATGGACAATTGGATAAAACAGTCGAGGGCCCATACCTGATAATTAACCAGTCAGAAGAATGCCTGGCAAGAATGAATGAGTGGTGCCAGGATCATCATTCCGCCAGTGGGCTGGTAGAAGAAGTTCGAAAAAGCAAAGTAACGGAGCAAGAAGCTACATT

Fln Alignment:

Contig9089___STSSRMEGKESTKQSEEQSPCTSLKRPLVWIDLEMTGLNVEDDRILEIACIITDGQLDKTVEGPYLIINQSEECLARMNEWCQDHHSASGLVEEVRKSKVTEQEA
Q9ZVE0_________________SSSSTGKQEESVNGSLEDG---DYKQPLVWIDLEMTGLNVEVDRILEIACIITNGDLTQSVEGPDLVVRQTKDCLDKMDDWCQTHHGASGLTKKVLLSAITEREA

SNPs (tot: 3)

Position	A %	G %	T %	Probability
143	25	75		0.996473
144	25		75	0.996473
146		25	75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain