SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene9061

Length: 327 nt

UniGene Fasta

>biog3_v1.0_unigene9061
AATGTACTTATGGTTTATCAGATCCAAAGGATGATGCAACATCTACTTCCAAAGCATCCTCTCATGTTTTCCAGGCTCTCCAGTACCTGCTAAAATTGTGTAGTCACCCATTGCTTGCAATAGGTGATATGCCAGCTGACCGTATTGCATCACATCTATCTGAATGTGTACCTGATAGTAAAGATATTAAATCAAGTCTACATGATTTGCATCATGCTCCAAAATTGGTAGCTCTTCAAGAAATATTAGAAGAATGTGGAATAGGTATAGCAGGCACAGGAAGTGAAAGCATAGCTGTTGCAGAAGGCAGTCAGCATCGTGTCCTTA

Ace file of the UniGene biog3_v1.0_unigene9061

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene27804	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	TATA box binding protein (TBP) associated factor (TAF)-like protein [Arabidopsis thaliana]	-	-	63%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	58%
Blast2go	tata-binding protein-associated factor	-	-	80%

Source	InterPros	Term	Type	Identity
Sma3	SNF2-related	IPR000330	-	-
Sma3	HEAT	IPR000357	-	-
Sma3	Signal recognition particle, SRP54 subunit, GTPase	IPR000897	-	-
Sma3	Helicase, C-terminal	IPR001650	-	-
Sma3	Armadillo-like helical	IPR011989	-	-
Sma3	Vps54-like	IPR012501	-	-
Sma3	Helicase, superfamily 1/2, ATP-binding domain	IPR014001	-	-
Sma3		IPR014021	-	-
Sma3	Chaperonin Cpn60, conserved site	IPR018370	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: F6I5H6

Fln msg: Distance to subject end: 214 aas, your sequence is shorter than subject: 108 - 2022

Fln protein: CTYGLSDPKDDATSTSKASSHVFQALQYLLKLCSHPLLAIGDMPADRIASHLSECVPDSKDIKSSLHDLHHAPKLVALQEILEECGIGIAGTGSESIAVAEGSQHRVL

Protein Length: 109

Fln nts: AATGTACTTATGGTTTATCAGATCCAAAGGATGATGCAACATCTACTTCCAAAGCATCCTCTCATGTTTTCCAGGCTCTCCAGTACCTGCTAAAATTGTGTAGTCACCCATTGCTTGCAATAGGTGATATGCCAGCTGACCGTATTGCATCACATCTATCTGAATGTGTACCTGATAGTAAAGATATTAAATCAAGTCTACATGATTTGCATCATGCTCCAAAATTGGTAGCTCTTCAAGAAATATTAGAAGAATGTGGAATAGGTATAGCAGGCACAGGAAGTGAAAGCATAGCTGTTGCAGAAGGCAGTCAGCATCGTGTCCTTA

Fln Alignment:

Contig9061___SDPKDDATSTSKASSHVFQALQYLLKLCSHPLLAIGDMPADRIASHLSECVPDSKDIKSSLHDLHHAPKLVALQEILEECGIGIAGTGSESIAVAEGSQHRVL
F6I5H6_________________TDTGEGNSASPKASSHVFQALQYLLKLCGHPLLVVGEKIPDSLTTILSEFFPGTSDIMSELHKLHHSPKLIALHEILEECGIGVDASSSEG-AVSVG-QHRVL

SNPs (tot: 3)

Position	A %	C %	G %	Probability
58	25	75		0.996473
59	25	75		0.996473
61		75	25	0.996473

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain