SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene9049

Length: 741 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene9049 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene12075	4/6

Source	Descriptions	Term	Type	Identity
AutoFact	Protein phosphatase, putative n=1 Tax=Ricinus communis RepID=B9T8J0_RICCO	-	-	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	90%
Blast2go	protein phosphatase 2c 57	-	-	73%

Source	GOs	Term	Type	Identity
Blast2go	photosystem stoichiometry adjustment	GO:0080005	Biological Process	73%
Blast2go	protein dephosphorylation	GO:0006470	Biological Process	73%
Blast2go	photosynthetic electron transport chain	GO:0009767	Biological Process	73%
Blast2go	metal ion binding	GO:0046872	Molecular Function	73%
Blast2go	protein serine/threonine phosphatase activity	GO:0004722	Molecular Function	73%
Blast2go	mitochondrion	GO:0005739	Cellular Component	73%
Blast2go	nucleolus	GO:0005730	Cellular Component	73%
Blast2go	protein serine/threonine phosphatase complex	GO:0008287	Cellular Component	73%
Blast2go	thylakoid	GO:0009579	Cellular Component	73%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	73%

Source	InterPros	Term	Type	Identity
Sma3	Protein phosphatase 2C, manganese/magnesium aspartate binding site	IPR000222	-	-
Sma3	Protein phosphatase 2C-like	IPR001932	-	-
Sma3	Lipocalin	IPR002345	-	-
Sma3		IPR014045	-	-
Sma3	Protein phosphatase 2C	IPR015655	-	-

Full-Lengther Next Prediction

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
492	25	75			0.996473
496		75		25	0.996473
543		66	33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain