SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene9018

Length: 1490 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene9018 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene746	66/66

Source	Descriptions	Term	Type	Identity
AutoFact	Precursor of protein cell division protease ftsh-like protein n=4 Tax=Magnoliophyta RepID=B9GQ31_POPTR	-	-	85%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	57%
Blast2go	chloroplast protease	-	-	95%

Source	ECs	Term	Type	e value	Identity
Blast2go	Hydrolases, Acting on peptide bonds (peptide hydrolases), Metalloendopeptidases.	EC:3.4.24.-	-	0.0	95%

Source	GOs	Term	Type	Identity
Blast2go	cell division	GO:0051301	Biological Process	95%
Blast2go	PSII associated light-harvesting complex II catabolic process	GO:0010304	Biological Process	95%
Blast2go	photosystem II repair	GO:0010206	Biological Process	95%
Blast2go	proteolysis	GO:0006508	Biological Process	95%
Blast2go	ATP catabolic process	GO:0006200	Biological Process	95%
Blast2go	cell cycle	GO:0007049	Biological Process	95%
Blast2go	photoinhibition	GO:0010205	Biological Process	95%
Blast2go	protein binding	GO:0005515	Molecular Function	95%
Blast2go	ATP-dependent peptidase activity	GO:0004176	Molecular Function	95%
Blast2go	metal ion binding	GO:0046872	Molecular Function	95%
Blast2go	metalloendopeptidase activity	GO:0004222	Molecular Function	95%
Blast2go	ATP binding	GO:0005524	Molecular Function	95%
Blast2go	thylakoid lumen	GO:0031977	Cellular Component	95%
Blast2go	integral to membrane	GO:0016021	Cellular Component	95%
Blast2go	chloroplast membrane	GO:0031969	Cellular Component	95%
Blast2go	chloroplast thylakoid membrane	GO:0009535	Cellular Component	95%

Source	InterPros	Term	Type	Identity
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	ATPase, AAA-type, core	IPR003959	-	-
Sma3	ATPase, AAA-type, conserved site	IPR003960	-	-
Sma3	Peptidase, FtsH	IPR005936	-	-
Sma3	Peptidase M41, FtsH extracellular	IPR011546	-	-
Sma3	Peptidase M41	IPR000642	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PQ75

Fln msg: your sequence is shorter than subject: 481 - 695

Fln protein: VWAALWTSVASKSKFQEVPETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVSGEAGVPFFSCAASEFVELFVGVGASRVRDLFEKAKAKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVRILQVHSRGKALAKDVDFEKIARRTPGFTGADLQNLMNEAAILAARRELKEISKDEIADALERIIAGPEKKNAVVSEEKKKLVAYHEAGHALVGALMPEYDPVAKISIIPRGQAGGLTFFAPSEDRLESGLYSRSYLENQMAVALGGRVAEEVIFGKENVTTGASNDFQQVSRVARQMVERLGFSKKIGQLSLGGGGGNPFLGQQMSPQKDYSMATADIVDSEVRELVEKAYERAKTIITTQIDILHKLADLLIEKESVDGEEFMSLFIDGKAELYVG*

Protein Length: 482

Fln nts: GTTTGGGCGGCCCTATGGACTTCGGTCGCCTCTAAGTCCAAGTTCCAGGAGGTGCCGGAGACTGGAGTTACATTTGCCGACGTGGCAGGCGCTGACCAGGCCAAGCTGGAGCTTCAGGAGGTGGTGGATTTCTTGAAAAACCCTGATAAGTATACTGCCCTTGGTGCCAAGATCCCCAAGGGATGCTTGTTGGTAGGTCCGCCGGGGACGGGCAAGACTCTGCTGGCCCGGGCTGTCTCAGGGGAGGCCGGGGTCCCCTTCTTTTCCTGCGCAGCGTCGGAGTTCGTCGAGCTCTTCGTCGGTGTAGGTGCGTCCCGGGTACGGGACCTGTTCGAGAAGGCCAAGGCCAAGGCGCCCTGCATCGTCTTTATCGATGAAATTGACGCGGTAGGGAGGCAAAGGGGGGCTGGGCTTGGCGGCGGTAATGATGAAAGGGAGCAGACAATCAATCAGCTGTTGACGGAGATGGACGGGTTCTCTGGGAACAGCGGGGTTATTGTTCTTGCGGCGACGAATCGGCCGGATGTTCTGGATTCAGCTTTGTTGCGGCCGGGCCGGTTTGATAGGCAGGTCACCGTAGACAGGCCGGACGTTGCCGGGAGAGTGAGGATCCTGCAGGTCCACTCAAGAGGCAAAGCATTGGCAAAGGATGTAGATTTTGAGAAAATTGCAAGGAGGACACCAGGCTTCACTGGTGCTGATTTGCAAAATCTAATGAATGAAGCTGCTATTCTTGCTGCTAGAAGAGAATTGAAGGAGATTAGCAAAGATGAAATTGCAGATGCTCTAGAAAGAATCATTGCTGGTCCTGAGAAGAAGAACGCTGTCGTGTCAGAAGAGAAGAAAAAACTTGTAGCATATCACGAGGCTGGTCATGCCCTTGTGGGTGCACTTATGCCAGAGTATGATCCTGTTGCTAAAATTTCAATCATTCCTCGTGGACAAGCTGGAGGCCTGACATTCTTTGCTCCTAGTGAAGACAGACTGGAATCTGGGCTTTACAGCAGAAGTTACCTTGAGAATCAGATGGCAGTTGCCCTCGGTGGAAGGGTGGCAGAAGAAGTTATTTTTGGGAAAGAAAATGTCACAACAGGAGCATCGAATGACTTCCAACAAGTATCTCGTGTTGCTCGGCAGATGGTTGAAAGACTTGGTTTTAGCAAGAAGATTGGACAACTATCCCTTGGAGGGGGTGGTGGAAATCCTTTTTTGGGGCAGCAAATGTCCCCGCAAAAGGATTATTCTATGGCAACTGCAGATATTGTTGATTCGGAAGTCAGAGAGCTTGTTGAGAAGGCCTATGAAAGGGCTAAGACGATAATCACAACACAGATTGATATTCTTCACAAGTTAGCAGATCTTCTCATAGAGAAGGAATCTGTAGACGGTGAGGAATTCATGAGCCTGTTTATAGATGGCAAGGCCGAACTCTATGTGGGTTAG___TTTTCCGAAAGTCGGTGTATTTATAACAAATAAAACAATTTTACATT

Fln Alignment:

Contig9018___SKSKFQEVPETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVSGEAGVPFFSCAASEFVELFVGVGASRVRDLFEKAKAKAPCIVFIDEIDAVXXXXXXXXXXGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVRILQVHSRGKALAKDVDFEKIARRTPGFTGADLQNLMNEAAILAARRELKEISKDEIADALERIIAGPEKKNAVVSEEKKKLVAYHEAGHALVGALMPEYDPVAKISIIPRGQAGGLTFFAPSEDRLESGLYSRSYLENQMAVALGGRVAEEVIFGKENVTTGASNDFQQVSRVARQMVERLGFSKKIXXXXXXXXXXXXXXXXQMSPQKDYSMATADIVDSEVRELVEKAYERAKTIITTQIDILHKLADLLIEKESVDGEEFMSL
C0PQ75_________________SKAKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGIGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDAALLRPGRFDRQVSVDVPDVKGRTEILKVHGGNKKFDSDVSLGVIAMRTPGFSGADLANLLNEAAILAGRRGRSAISAKEIDDSIDRIVAGME-GTIMTDGKNKSLVAYHEVGHAICGTLTPGHDAVQKVTLIPRGQARGLTWFIPGDD---PTLISRQQLFARIVGGLGGRAAEQVIFGESEVTTGAASDLQMVTSMAKQMVTVFGMS-EIGPWSLMDAAQSGDVIMRMMARNSMSEKLAEDIDEAVKSLSDQAYEVALGHIRNNRAAIDKIVEVLLEKETMTGDEFRAL

SNPs (tot: 14)

Position	A %	C %	G %	T %	Probability
1019	16	83			0.994512
1020	16	83			0.994512
1021		83		16	0.994512
1027	16			83	0.994512
1030		83		16	0.994512
1133	16		83		0.994512
1136			83	16	0.994512
1137			83	16	0.994512
1237	25		75		0.996473
1238		25	75		0.996473
1240		75		25	0.996473
1241		75		25	0.996473
1260			80	20	0.995493
1261		80		20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain