SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene8981

Length: 396 nt

UniGene Fasta

>biog3_v1.0_unigene8981
AATGTCATGCTGGAGAGTAGATCCTTTGAGGGAACGAGGGCGCCACCAGAGACAATGGCAACAAAGACTTCAATTGTGAATGTCATGCCTCCTGCAGTCACTGCTCCTGGTTCCCTTCCCGGTGCTATAGAACGTTCAGAGAGACTAACACCTGCAGTGTCAATGACCAATTTTAGTAGTATAGACAGCAGTGGACCCAGATGTTAAACCAAGGCTTCTAGATGAGGTTACAGACAAGAGCAAGAACTGGAAATTGACTGAGATCACTGACTCGGGTCAGTGTAGGTCTCTCAGGTTGCCTGACACAATGCATGCGAGCAAGGTAGTAAGACTGATATACACCAATTCCAGTGTTGCTATTTTAGCACTGGCATCAAATGCTCTCCATAAGACATT

Ace file of the UniGene biog3_v1.0_unigene8981

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene13544	4/6
SustainPine v2.0	sp_v2.0_unigene24173	2/6

Source	Descriptions	Term	Type	Identity
AutoFact	WD-40 repeat protein-like [Oryza sativa Japonica Group] gb\|EAZ41606.1\| hypothetical protein OsJ_26138 [Oryza sativa Japonica Group]	-	-	71%
FL-Next	sp=Topless-related protein 4; Arabidopsis thaliana (Mouse-ear cress).	-	-	64%
Blast2go	wd repeat-containing	-	-	81%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3	Histidine phosphatase superfamily, clade-2	IPR000560	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	WD40 repeat	IPR001680	-	-
Sma3	NB-ARC	IPR002182	-	-
Sma3	LisH dimerisation motif	IPR006594	-	-
Sma3	CTLH, C-terminal LisH motif	IPR006595	-	-
Sma3	LisH dimerisation motif, subgroup	IPR013720	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	F-box associated interaction domain	IPR017451	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	Cytochrome b5, heme-binding site	IPR018506	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3		IPR019782	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q27GK7

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 330 aas, your sequence is shorter than subject: 131 - 1135

Fln protein: MSCWRVDPLRERGRHQRQWQQRLQL*MSCLLQSLLLVPFPVL*NVQRD*HLQCQ*PILVV*TAVDPDVKPRLLDEVTDKSKNWKLTEITDSGQCRSLRLPDTMHASKVVRLIYTNSSVAILALASNALHKT

Protein Length: 132

Fln nts: AATGTCATGCTGGAGAGTAGATCCTTTGAGGGAACGAGGGCGCCACCAGAGACAATGGCAACAAAGACTTCAATTGTGAATGTCATGCCTCCTGCAGTCACTGCTCCTGGTTCCCTTCCCGGTGCTATAGAACGTTCAGAGAGACTAACACCTGCAGTGTCAATGACCAATTTTAGTAGTATAGACAGCAGTGGACCCAGATGTTAAACCAAGGCTTCTAGATGAGGTTACAGACAAGAGCAAGAACTGGAAATTGACTGAGATCACTGACTCGGGTCAGTGTAGGTCTCTCAGGTTGCCTGACACAATGCATGCGAGCAAGGTAGTAAGACTGATATACACCAATTCCAGTGTTGCTATTTTAGCACTGGCATCAAATGCTCTCCATAAGACATT

Fln Alignment:

Contig8981___PDVKPRLLDEVTDKSKNWKLTEITDSGQCRSLRLPDTMHASKVVRLIYTNSSVAILALASNALHK
Q27GK7_________________PDVKPRIADDA-EKSKTWKLTEISERSQLRTLRLPDTLLPARVVKLIYTNSGGAILALAENAAHK

SNPs (tot: 3)

Position	A %	C %	G %	Probability
353	40		60	1.0
362	50		50	1.0
379	50	50		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain