SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene8977

Length: 2770 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene8977
ATTCTTGTGTGTGCGTCTAACGTGATAAGCTACCCTCGGAGGACCAAGGTTTTGATGTTCGCCTCCCTTCATTTTGATCTGTTTCTTCGTTTTCATTTTGCGCAAAAGCTCCATTAATCGGTCATTCTTTCGGCGATTTCTTGTTTTCACGGGACGCATTTTCTGTATGTGCGCACACAGCGGCTGCTTTTAAGAAATCTGTAGCATTTCAATATGACAATCACCTCAGGTGTCACACTCGCCGATGGGTAACTATTTGTCCGTCACAAGCGGGTTCTCTCAGGCGTTCCGGAAAATGTGCTGTTGACTTCTGCTTCAGGCATCGGCCACGCAGACGGTGTATTCATCGGAGCGTTGTGTTCGGAGACTAACAGTCGCCATGTCGTTCCTCTTGGCACTCTTGAGAATGTTAGATTCCTGGCTTGTTTCCGCTTCAAGCTTTGGTGGATGTCCCAAAAAATGGGAAGTTCGGGAAAGGAAATTCCTATGGAGACTCAATTTTTGCTATTGGAAAACAAGGCTGATGAGGAGGGAGAGGAGACAATATATACTGTTTTCTTGCCTCTTGTGGAGGGTTCCTTCAGGGCATGTTTACAAGGAAACGAAAATGATGCATTGGAGCTCTGCTTAGAGAGTGGGGATCCTGCCGTGGAAGAATTGTCCTTTACACATTCGCTGCTTATTAATGCCGGAACAGACCCTTTTAAAGTGATTACAGATGGAATAAAGTCTGTGGAACTTCACTTGCAGACATTCCGTCACAGAGAGGAGAAAAAGATGCCTGGCATTGTTGACTGGTTTGGATGGTGTACTTGGGATGCCTTTTATACAGCTGTTTCAGCAGAGGGTGTAGAACAGGGGCTAAAGAGCTTGTCAGAAGGAGGCACCCCGCCACGTTTTGTCATCATTGATGATGGCTGGCAATCTGTTGGAACGGATCAGAGACAAGAAGATGCTCCTGAAAAAGAGCTTATAGGGCGCTTGACTCATATAAAAGAGAATCACAAATTCCAGAAGGATGGGAAAGAAGGTGAACAGCAGGAAGACCCAACTTTGGGCATTCAGCATGTAGTTCGAATGGCTAAAGAGAAGCATCATTTAAAGTATGTGTATGTATGGCACGCAATTACAGGCTACTGGGGAGGTGTTAAACCAGGTGTTTCTGGAATGGAGCACTACGACTCTAAAATGAAGTACCCTGTAACTTCACCAGGTGTCTTAAACCAGGAGCCGGGATTGCAAACAGATAATCTCACCACTCAAGGACTTGGTTTGGTGAATCCCAAGAAAGTTTTCCAATTCTACAACGAACTGCACAGTTACCTGGCAGCAGCAGGAATTGATGGCGTCAAAGTTGATGTTCAATGCATTCTCGAGACTCTTGGCGCAGGTCTTGGTGGAAGAGTGGCACTAACAACCCAATACCACAAGGCGTTGGATGCTTCTGTGGCTAGTAATTTCCCTGACAATGGCTGCATTGCATGCATGAGTCACAACACGGATGCACTTTATTGTTCAAGGCAGACGGCAATTGTAAGGGCTTCGGATGATTTCTTCCCAAGGGAGCCTGTATCTCACACCATCCATATTGCCTCAGTTGCTTACAACAGTGTCTTCCTTGGGGAGTTCATGCTACCTGATTGGGATATGTTTCATAGTCTTCATCCAGCTGCAGAATACCATGCCGCTGCACGCGCCATTGGTGGTTGTCCTATATACGTTAGTGATAAACCTGGTCATCACAACTTCGAGTTGTTGAGGAAGCTGGTCCTTCCGGATGGATCCATTTTGCGACCACGATTACCTGGCAGACCTACTTCTGATTGCTTGTTTAATGATCCCAACCGTGATGGAAAGAGTTTGTTGAAAATTTGGAACATGAACAAATACACAGGAGTTTTAGGGGTATTCAATTGCCAGGGAGCTGCTTGGAGCAATATCGACAAGAAAAATGTATTTCATGACAAAAACCCAGATACATTAACTGGAAGTGTTCGAGCTCAAGATGTACATTTGTTGGCAGAGGCCGCAGAAGACGATTGGGACGGTGATTCTGCAATATTTACTCATTCTGGTGAACTTGTGCGTCTTCCAAAACATTCACTTTTACCAGTCACACTCAAAGTTCTAGAGAAAGAAATTTACACAGTCTCACCTATAAAGGGTTTAGGAACAGGAGTTTCCTTTGCTCCGTTGGGTCTCATTGATATGTTCAATGCTGGAGGTGCTATCCATAATTTAGAGTACCAAATTCACCAAGATTCCCAGTTTTCTGAGGCAACCGAGATTCTTGGAATGCCAACAAACCCTTCTGAAAGCGGCCAAGTAAAAACAGCAACAGTGAAGTTGGCTGTCCATGGCTGTGGACGGTTTGGAGCATACTCATCAATCAGACCACGGAAATGCTCAATTGAATCTTCAACTTGTGACTTCAGTTATGATCCCGACTCAGGGCTTCTAGCGCTGGTTTTGGAGACACCAGTTGAGGGACAACTATGGAACGTGACAGTTGAGCTTTAAGCAAAAACGGCTTTCTACCCATCAACAGGCCTACCAAGAGAAAGCCTTAAAATGTAGGATTTTCACTTGTAAACCTTGACGAGGAACCGAAAGTAGGCGTAGTATGTATCTTCATAGCTCACTCTCTCCTGGTATTTATCTTATTATGGCACCCATGAAGGCTTGTAAGCACTATGCTAGTTCTCGAACACCAATAACTGATTCACTTCTCTACACCAAATTCTGGAAAATCGTTTGAGCGATTTACATT

Ace file of the UniGene biog3_v1.0_unigene8977 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene24874	30/114
SustainPine v2.0	sp_v2.0_unigene41064	83/114
SustainPine v2.0	sp_v2.0_unigene77599	1/114

Source	Descriptions	Term	Type	Identity
AutoFact	putative galactinol--sucrose galactosyltransferase 6 [Arabidopsis thaliana] gb\|AAL90901.1\| AT5g20250/F5O24_140 [Arabidopsis thaliana] gb\|AAN18198.1\| At5g20250/F5O24_140 [Arabidopsis thaliana] dbj\|BAE99252.1\| seed imbitition protein-like [Arabidopsis thali	-	-	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	57%
Blast2go	galactinol--sucrose galactosyltransferase 6	-	-	75%

Source	ECs	Term	Type	e value	Identity
Blast2go	Galactinol--sucrose galactosyltransferase.	EC:2.4.1.82	-	0.0	75%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Galactose metabolism	00052		0.0	75%

Source	GOs	Term	Type	Identity
Blast2go	negative regulation of abscisic acid mediated signaling pathway	GO:0009788	Biological Process	75%
Blast2go	response to oxidative stress	GO:0006979	Biological Process	75%
Blast2go	raffinose catabolic process	GO:0034484	Biological Process	75%
Blast2go	response to cold	GO:0009409	Biological Process	75%
Blast2go	galactinol-sucrose galactosyltransferase activity	GO:0047274	Molecular Function	75%
Blast2go	protein binding	GO:0005515	Molecular Function	75%
Blast2go	chloroplast	GO:0009507	Cellular Component	75%
Blast2go	response to karrikin	GO:0080167	Biological Process	75%

Source	InterPros	Term	Type	Identity
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	RNA recognition motif domain	IPR000504	-	-
Sma3	Cyclic nucleotide-binding domain	IPR000595	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	Raffinose synthase	IPR008811	-	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	-
Sma3	Beta tubulin, autoregulation binding site	IPR013838	-	-
Sma3		IPR015706	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AEI9

Fln msg: your sequence is longer than subject: 691 - 338

Fln protein: MSQKMGSSGKEIPMETQFLLLENKADEEGEETIYTVFLPLVEGSFRACLQGNENDALELCLESGDPAVEELSFTHSLLINAGTDPFKVITDGIKSVELHLQTFRHREEKKMPGIVDWFGWCTWDAFYTAVSAEGVEQGLKSLSEGGTPPRFVIIDDGWQSVGTDQRQEDAPEKELIGRLTHIKENHKFQKDGKEGEQQEDPTLGIQHVVRMAKEKHHLKYVYVWHAITGYWGGVKPGVSGMEHYDSKMKYPVTSPGVLNQEPGLQTDNLTTQGLGLVNPKKVFQFYNELHSYLAAAGIDGVKVDVQCILETLGAGLGGRVALTTQYHKALDASVASNFPDNGCIACMSHNTDALYCSRQTAIVRASDDFFPREPVSHTIHIASVAYNSVFLGEFMLPDWDMFHSLHPAAEYHAAARAIGGCPIYVSDKPGHHNFELLRKLVLPDGSILRPRLPGRPTSDCLFNDPNRDGKSLLKIWNMNKYTGVLGVFNCQGAAWSNIDKKNVFHDKNPDTLTGSVRAQDVHLLAEAAEDDWDGDSAIFTHSGELVRLPKHSLLPVTLKVLEKEIYTVSPIKGLGTGVSFAPLGLIDMFNAGGAIHNLEYQIHQDSQFSEATEILGMPTNPSESGQVKTATVKLAVHGCGRFGAYSSIRPRKCSIESSTCDFSYDPDSGLLALVLETPVEGQLWNVTVEL*

Protein Length: 692

Fln nts: ATTCTTGTGTGTGCGTCTAACGTGATAAGCTACCCTCGGAGGACCAAGGTTTTGATGTTCGCCTCCCTTCATTTTGATCTGTTTCTTCGTTTTCATTTTGCGCAAAAGCTCCATTAATCGGTCATTCTTTCGGCGATTTCTTGTTTTCACGGGACGCATTTTCTGTATGTGCGCACACAGCGGCTGCTTTTAAGAAATCTGTAGCATTTCAATATGACAATCACCTCAGGTGTCACACTCGCCGATGGGTAACTATTTGTCCGTCACAAGCGGGTTCTCTCAGGCGTTCCGGAAAATGTGCTGTTGACTTCTGCTTCAGGCATCGGCCACGCAGACGGTGTATTCATCGGAGCGTTGTGTTCGGAGACTAACAGTCGCCATGTCGTTCCTCTTGGCACTCTTGAGAATGTTAGATTCCTGGCTTGTTTCCGCTTCAAGCTTTGGTGG_-_ATGTCCCAAAAAATGGGAAGTTCGGGAAAGGAAATTCCTATGGAGACTCAATTTTTGCTATTGGAAAACAAGGCTGATGAGGAGGGAGAGGAGACAATATATACTGTTTTCTTGCCTCTTGTGGAGGGTTCCTTCAGGGCATGTTTACAAGGAAACGAAAATGATGCATTGGAGCTCTGCTTAGAGAGTGGGGATCCTGCCGTGGAAGAATTGTCCTTTACACATTCGCTGCTTATTAATGCCGGAACAGACCCTTTTAAAGTGATTACAGATGGAATAAAGTCTGTGGAACTTCACTTGCAGACATTCCGTCACAGAGAGGAGAAAAAGATGCCTGGCATTGTTGACTGGTTTGGATGGTGTACTTGGGATGCCTTTTATACAGCTGTTTCAGCAGAGGGTGTAGAACAGGGGCTAAAGAGCTTGTCAGAAGGAGGCACCCCGCCACGTTTTGTCATCATTGATGATGGCTGGCAATCTGTTGGAACGGATCAGAGACAAGAAGATGCTCCTGAAAAAGAGCTTATAGGGCGCTTGACTCATATAAAAGAGAATCACAAATTCCAGAAGGATGGGAAAGAAGGTGAACAGCAGGAAGACCCAACTTTGGGCATTCAGCATGTAGTTCGAATGGCTAAAGAGAAGCATCATTTAAAGTATGTGTATGTATGGCACGCAATTACAGGCTACTGGGGAGGTGTTAAACCAGGTGTTTCTGGAATGGAGCACTACGACTCTAAAATGAAGTACCCTGTAACTTCACCAGGTGTCTTAAACCAGGAGCCGGGATTGCAAACAGATAATCTCACCACTCAAGGACTTGGTTTGGTGAATCCCAAGAAAGTTTTCCAATTCTACAACGAACTGCACAGTTACCTGGCAGCAGCAGGAATTGATGGCGTCAAAGTTGATGTTCAATGCATTCTCGAGACTCTTGGCGCAGGTCTTGGTGGAAGAGTGGCACTAACAACCCAATACCACAAGGCGTTGGATGCTTCTGTGGCTAGTAATTTCCCTGACAATGGCTGCATTGCATGCATGAGTCACAACACGGATGCACTTTATTGTTCAAGGCAGACGGCAATTGTAAGGGCTTCGGATGATTTCTTCCCAAGGGAGCCTGTATCTCACACCATCCATATTGCCTCAGTTGCTTACAACAGTGTCTTCCTTGGGGAGTTCATGCTACCTGATTGGGATATGTTTCATAGTCTTCATCCAGCTGCAGAATACCATGCCGCTGCACGCGCCATTGGTGGTTGTCCTATATACGTTAGTGATAAACCTGGTCATCACAACTTCGAGTTGTTGAGGAAGCTGGTCCTTCCGGATGGATCCATTTTGCGACCACGATTACCTGGCAGACCTACTTCTGATTGCTTGTTTAATGATCCCAACCGTGATGGAAAGAGTTTGTTGAAAATTTGGAACATGAACAAATACACAGGAGTTTTAGGGGTATTCAATTGCCAGGGAGCTGCTTGGAGCAATATCGACAAGAAAAATGTATTTCATGACAAAAACCCAGATACATTAACTGGAAGTGTTCGAGCTCAAGATGTACATTTGTTGGCAGAGGCCGCAGAAGACGATTGGGACGGTGATTCTGCAATATTTACTCATTCTGGTGAACTTGTGCGTCTTCCAAAACATTCACTTTTACCAGTCACACTCAAAGTTCTAGAGAAAGAAATTTACACAGTCTCACCTATAAAGGGTTTAGGAACAGGAGTTTCCTTTGCTCCGTTGGGTCTCATTGATATGTTCAATGCTGGAGGTGCTATCCATAATTTAGAGTACCAAATTCACCAAGATTCCCAGTTTTCTGAGGCAACCGAGATTCTTGGAATGCCAACAAACCCTTCTGAAAGCGGCCAAGTAAAAACAGCAACAGTGAAGTTGGCTGTCCATGGCTGTGGACGGTTTGGAGCATACTCATCAATCAGACCACGGAAATGCTCAATTGAATCTTCAACTTGTGACTTCAGTTATGATCCCGACTCAGGGCTTCTAGCGCTGGTTTTGGAGACACCAGTTGAGGGACAACTATGGAACGTGACAGTTGAGCTTTAA___GCAAAAACGGCTTTCTACCCATCAACAGGCCTACCAAGAGAAAGCCTTAAAATGTAGGATTTTCACTTGTAAACCTTGACGAGGAACCGAAAGTAGGCGTAGTATGTATCTTCATAGCTCACTCTCTCCTGGTATTTATCTTATTATGGCACCCATGAAGGCTTGTAAGCACTATGCTAGTTCTCGAACACCAATAACTGATTCACTTCTCTACACCAAATTCTGGAAAATCGTTTGAGCGATTTACATT

Fln Alignment:

Contig8977___LDASVASNFPDNGCIACMSHNTDALYCSRQTAIVRASDDFFPREPVSHTIHIASVAYNSVFLGEFMLPDWDMFHSLHPXXXXXXXXXAIGGCPIYVSDKPGHHNFELLRKLVLPDGSILRPRLPGRPTSDCLFNDPNRDGKSLLKIWNMNKYTGVLGVFNCQGAAWSNIDKKNVFHDKNPDTLTGSVRAQDVHLLAEAAEDDWDGDSAIFTH-SGELVRLPKHSLLPVTLKVLEKEIYTVSPIKGLGTGVSFAPLGLIDMFNAGGAIHNLEYQIHQDSQFSEATEILGMPTNPSESGQVKTATVKLAVHGCGRFGAYSSIRPRKCSIESSTCDFSYDPDSGLLALVLETP-VEGQLWNVTVEL
D5AEI9_________________MEASIARNFPDNGIISCMSHNTDGLYSSKQTAVIRASDDFWPRDPASHTIHIASVAYNSVFLGEFMQPDWDMFHSLHPMAEYHAAARAVGGCSIYVSDKPGEHDFDLLKKIVLPDGSLLRAQLPGRPTKDCLFTDPARDGTNLLKLWNLNKHTGVLGVFNCQGAGWCRVDKKNLIHDSQPKTISGAIRSMDVDYLPEIADENWDGDSIVYSHRGGELVCLPKSAALPITLKAREYEVFTIVPLKWLSNDISFAPIGLIKMFNSGGAIS--AYWFYQN-----------------------TSTVYLKVRGCGDFGAYCSVMPEAVYVDSTETEFSYQEECRLISFTLRVPETELYLWDIRIKI

SNPs (tot: 87)

Position	A %	C %	G %	T %	Probability
129	20		80		0.995493
133			80	20	0.995493
256	14		85		0.993533
257	14	85			0.993533
259		85	14		0.993533
260	85			14	0.993533
392		20		80	0.995493
393	20		80		0.995493
394		80		20	0.995493
460	80			20	0.995493
590	80	20			0.999996
592		80		20	0.999996
703	16		83		0.994512
705	16		83		0.994512
707	66			16	0.988813
714	20		80		0.995493
717			80	20	0.995493
718	80			20	0.995493
725	75		25		0.996473
739		75		25	0.996473
807	33			66	0.997452
808	33	66			1.0
811			83	16	0.994512
813	60			40	1.0
834	16			83	0.994512
874	14	85			0.993533
877		85	14		0.993533
964	10	90			0.90298
966			90	10	0.90298
1060		11	88		0.923564
1062		88		11	0.923564
1063	88			11	0.923564
1068		87		12	0.992554
1069		87		12	0.992554
1089	12			87	0.992554
1090			87	12	0.992554
1105	27		72		1.0
1153	85			14	0.993533
1154			85	14	0.993533
1188	12		75	12	0.975346
1233	10	90			0.90298
1234	10	90			0.90298
1244		90		10	0.90298
1246	10		90		0.90298
1247		10		90	0.90298
1248	10	90			0.90298
1250			90	10	0.90298
1354		87	12		0.992554
1381	10	90			0.90298
1382	10	90			0.90298
1386			10	90	0.90298
1425	11		88		0.923564
1426		88		11	0.923564
1427		88		11	0.923564
1430		90		10	0.90298
1475	12		87		0.992554
1476		12	87		0.992554
1478	87			12	0.992554
1479	87			12	0.992554
1501	12	87			0.992554
1502		87		12	0.992554
1503	87		12		0.992554
1504	87			12	0.992554
1788	11	88			0.923564
1790	88			11	0.923564
1791			88	11	0.923564
1806	25			75	1.0
1807		25		75	1.0
1808	25			75	1.0
1873	70			30	1.0
1874	70			30	1.0
1907	16			83	0.994512
1908		16		83	0.994512
1910			83	16	0.994512
1911		83		16	0.994512
1948	50	50			1.0
1950			50	50	1.0
1951			50	50	1.0
2017	66			33	0.997452
2123	14	85			0.993533
2124			85	14	0.993533
2126		85		14	0.993533
2164	12			87	0.992554
2166			12	87	0.992554
2261	14	85			0.993533
2264	80			20	0.995493
2523	33		66		0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain