SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene8930

Length: 223 nt

UniGene Fasta

>biog3_v1.0_unigene8930
ATTGGGATGGGTAACATGGGCTGCTATGAAAATGACTTCGAATCAGCCATGTTGGAAGACAATGTCATACTACTCTCGGAAGGCTGCTTCATGGATTCTGGAAGATTCATGTCCAGATTATATGCAAAAGGCTGAAGAATGTTTGAAGCGAGAGAAAGAAAGAGTTAGTCATTATTTACATGCAGACAGCGAGCAAAAGTTATTGGGGAGGGTAGAACATGAG

Ace file of the UniGene biog3_v1.0_unigene8930

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene3168	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	cullin-like protein1 [Pisum sativum]	-	-	77%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	90%
Blast2go	protein	-	-	89%

Source	GOs	Term	Type	Identity
Blast2go	ubiquitin-dependent protein catabolic process	GO:0006511	Biological Process	89%
Blast2go	ubiquitin protein ligase binding	GO:0031625	Molecular Function	89%
Blast2go	cullin-RING ubiquitin ligase complex	GO:0031461	Cellular Component	89%

Source	InterPros	Term	Type	Identity
Sma3	Cullin, N-terminal	IPR001373	-	-
Sma3	Protein translocase complex, SecE/Sec61-gamma subunit	IPR001901	-	-
Sma3	Protein of unknown function DUF1442	IPR009902	-	-
Sma3	Winged helix-turn-helix transcription repressor DNA-binding	IPR011991	-	-
Sma3	Cullin, conserved site	IPR016157	-	-
Sma3	Cullin homology	IPR016158	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LQB2

Fln msg: Overlapping hits, possible frame ERROR between 60 and 59, Distance to subject end: 487 aas, your sequence is shorter than subject: 75 - 744

Fln protein: IGMGNMGCYENDFESAMLExxMSYYSRKAASWILEDSCPDYMQKAEECLKREKERVSHYLHADSEQKLLGRVEHE

Protein Length: 76

Fln nts: ATTGGGATGGGTAACATGGGCTGCTATGAAAATGACTTCGAATCAGCCATGTTGGAAxxxxxxATGTCATACTACTCTCGGAAGGCTGCTTCATGGATTCTGGAAGATTCATGTCCAGATTATATGCAAAAGGCTGAAGAATGTTTGAAGCGAGAGAAAGAAAGAGTTAGTCATTATTTACATGCAGACAGCGAGCAAAAGTTATTGGGGAGGGTAGAACATGAG

Fln Alignment:

Contig8930___IGMGNMGCYENDFESAMLEDTMSYYSRKAASWILEDSCPDYMQKAEECLKREKERVSHYLHADSEQKLLGRVEHE
B8LQB2_________________IGMGNMDAYENDFESAMLEDTASYYSRKAASWILEDSCPDYMLKAEECLKREKERVAHYLHSSSEQKLLEKVQNE

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
62	66	33			0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain