SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene8897

Length: 405 nt

UniGene Fasta

>biog3_v1.0_unigene8897
GAGAGTGGCAGCTACTTTACTGAAGTTCAAGTCATATTGAATTTGATGGAATCAAGGTGGTAACCCCAACTGGGAATACCTTGGTGGAAGATTTAACTCTGAAGGTGGAACCGGGTTCTAATCTTCTTATTACTGGTCCTAATGGCAGTGGTAAAAGCTCTTTATTCCGGGTACTTGGAGGGCTTTGGCCCTTGGTTGCCGGTCGTATTACAAAACCTGGAGTGGGATCAGACCTGAATAATGAGATATTTTATGTGCCACAAAGGCCTTATACTGCCTTTGGCACCTTGTGTGAGCAGCTGATATATCCTCTTACTGCATCAGAGGCGACTGAGCCAATTACCAAGGAAGGCATGCGTGAGCTACTGAAAAAGCGATGGTGGAATCAAAGTTTAAAGATACATT

Ace file of the UniGene biog3_v1.0_unigene8897

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene27253	2/3

Source	Descriptions	Term	Type	Identity
AutoFact	ATP-binding cassette transporter, subfamily D, member 5, group PMP protein PpABCD5 n=1 Tax=Physcomitrella patens subsp. patens RepID=A9T1K4_PHYPA	-	-	79%
FL-Next	sp=ABC transporter D family member 1; Arabidopsis thaliana (Mouse-ear cress).	-	-	45%
Blast2go	abc transporter d family member	-	-	88%

Source	ECs	Term	Type	e value	Identity
Blast2go	Nucleoside-triphosphatase.	EC:3.6.1.15	-	0.0	88%

Source	KEGGs	Term	Identity
Blast2go	Purine metabolism	00230	88%
Blast2go	Thiamine metabolism	00730	88%
Blast2go	Metabolic pathways	01100	88%

Source	GOs	Term	Type	Identity
Blast2go	fatty-acyl-CoA transport	GO:0015916	Biological Process	88%
Blast2go	fatty acid beta-oxidation	GO:0006635	Biological Process	88%
Blast2go	positive regulation of seed germination	GO:0010030	Biological Process	88%
Blast2go	nucleoside-triphosphatase activity	GO:0017111	Molecular Function	88%
Blast2go	glyoxysomal membrane	GO:0046861	Cellular Component	88%

Source	InterPros	Term	Type	Identity
Sma3	ABC transporter-like	IPR003439	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	ABC transporter, N-terminal	IPR010509	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-
Sma3	ABC transporter, integral membrane type 1	IPR017940	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q94FB9

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 123 aas, your sequence is shorter than subject: 134 - 1337

Fln protein: EWQLLY*SSSHIEFDGIKVVTPTGNTLVEDLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVAGRITKPGVGSDLNNEIFYVPQRPYTAFGTLCEQLIYPLTASEATEPITKEGMRELLKKRWWNQSLKIH

Protein Length: 135

Fln nts: GAGAGTGGCAGCTACTTTACTGAAGTTCAAGTCATATTGAATTTGATGGAATCAAGGTGGTAACCCCAACTGGGAATACCTTGGTGGAAGATTTAACTCTGAAGGTGGAACCGGGTTCTAATCTTCTTATTACTGGTCCTAATGGCAGTGGTAAAAGCTCTTTATTCCGGGTACTTGGAGGGCTTTGGCCCTTGGTTGCCGGTCGTATTACAAAACCTGGAGTGGGATCAGACCTGAATAATGAGATATTTTATGTGCCACAAAGGCCTTATACTGCCTTTGGCACCTTGTGTGAGCAGCTGATATATCCTCTTACTGCATCAGAGGCGACTGAGCCAATTACCAAGGAAGGCATGCGTGAGCTACTGAAAAAGCGATGGTGGAATCAAAGTTTAAAGATACATT

Fln Alignment:

Contig8897___SSSHIEFDGIKVVTPTGNTLVEDLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVAGRITKPG-----VGSDLNNEIFYVPQRPYTAFGTLCEQLIYPLTASEATEPITK
Q94FB9_________________SQDLLSFSEVDIITPAQKLMASKLSCEIVSGKSLLVTGPNGSGKTSVFRVLRDIWPTVCGRLTKPSLDIKELGS--GNGMFFVPQRPYTCLGTLRDQIIYPLSKEEAEKRAAK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain