SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene8837

Length: 430 nt

UniGene Fasta

>biog3_v1.0_unigene8837
GATGGCTTCAATCATAGAGTGTTACATAAAAGACAATCCTGATTCTACCGTGGAAAATGCTTTAAATCAAATAAAGGGCATCCTTCATCTCTCCCTTGAGGAAATGAATCGGGAGTTTCTTAAGCAGGACAGCGTACCATTGTGTTGTAAGAAGTTCACTTTCAATATAACACGAGGCCTTCAATTCCTCTACAAATACGGAGATGGCATATCCATTTCTAACAACGAAGTGAAGGAGCAGATATTCAAAATTCTCGTCGACCAAGTACCAATTGAGGAATAATGACGACTTGGTTACTAGCTGTGTGTATTAATTATGTTTTTGAATGTTTTATGCTTATTAAGTGCGTATGGCCATAGGGACGTGGATTAAATAAGCGGCCGGATAGAGAACAAAAATGTTTATGGACGTAGTTCTGCCAAATACATT

Ace file of the UniGene biog3_v1.0_unigene8837

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene12641	2/3
SustainPine v2.0	sp_v2.0_unigene32791	1/3

Source	Descriptions	Term	Type	Identity
AutoFact	Caryophyllene/humulene synthase n=1 Tax=Pinus sylvestris RepID=B4XAK4_PINSY	-	-	92%
FL-Next	tr=Caryophyllene/humulene synthase; Pinus sylvestris (Scots pine).	-	-	92%
Blast2go	longifolene synthase	-	-	78%

Source	ECs	Term	Type	e value	Identity
Blast2go	Lyases, Carbon-oxygen lyases, Acting on phosphates.	EC:4.2.3.-	-	0.0	78%

Source	KEGGs	Term	Identity
Blast2go	Monoterpenoid biosynthesis	00902	78%
Blast2go	Sesquiterpenoid biosynthesis	00909	78%
Blast2go	Biosynthesis of terpenoids and steroids	01062	78%
Blast2go	Metabolic pathways	01100	78%
Blast2go	Biosynthesis of secondary metabolites	01110	78%

Source	GOs	Term	Type	Identity
Blast2go	metabolic process	GO:0008152	Biological Process	78%
Blast2go	carbon-oxygen lyase activity, acting on phosphates	GO:0016838	Molecular Function	78%
Blast2go	magnesium ion binding	GO:0000287	Molecular Function	78%
Blast2go	cytoplasm	GO:0005737	Cellular Component	78%

Source	InterPros	Term	Type	Identity
Sma3	Prenyltransferase/squalene oxidase	IPR001330	-	-
Sma3	Terpene synthase-like	IPR001906	-	-
Sma3	Terpene synthase, metal-binding domain	IPR005630	-	-
Sma3	Terpenoid synthase	IPR008949	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B4XAK4

Fln msg: your sequence is shorter than subject: 94 - 575

Fln protein: MASIIECYIKDNPDSTVENALNQIKGILHLSLEEMNREFLKQDSVPLCCKKFTFNITRGLQFLYKYGDGISISNNEVKEQIFKILVDQVPIEE*

Protein Length: 95

Fln nts: GATGGCTTCAATCATAGAGTGTTACATAAAAGACAATCCTGATTCTACCGTGGAAAATGCTTTAAATCAAATAAAGGGCATCCTTCATCTCTCCCTTGAGGAAATGAATCGGGAGTTTCTTAAGCAGGACAGCGTACCATTGTGTTGTAAGAAGTTCACTTTCAATATAACACGAGGCCTTCAATTCCTCTACAAATACGGAGATGGCATATCCATTTCTAACAACGAAGTGAAGGAGCAGATATTCAAAATTCTCGTCGACCAAGTACCAATTGAGGAATAA___TGACGACTTGGTTACTAGCTGTGTGTATTAATTATGTTTTTGAATGTTTTATGCTTATTAAGTGCGTATGGCCATAGGGACGTGGATTAAATAAGCGGCCGGATAGAGAACAAAAATGTTTATGGACGTAGTTCTGCCAAATACATT

Fln Alignment:

Contig8837___MASIIECYIKDNPDSTVENALNQIKGILHLSLEEMNREFLKQDSVPLCCKKFTFNITRGLQFLYKYGDGISISNNEVKEQIFKILVDQVPIEE
B4XAK4_________________MASIIECYIKDNPDSTVGNALNRIKGILQLSLEEMNREFLKQDSVPLCCKKFTFNITRGLQFLYKYGDGISISNNEVKDQIFKILVEQVPMDE

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
238		25	50		0.995533
241		25	75		0.996473
244	50	25		25	0.995533
259		66	33		0.997452
262		66	33		0.997452
268	33		66		0.997452
271	66		33		0.997452
290		66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain