SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene8805

Length: 185 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene8805
CTGTTCTGTTATTTTTCGTAGGTGTGTCTGTTTTAGAATCAATGGCTGCCGCAGGCGGCAGTAGGAACCGTAACAACAACAATGGAGGGCGGAACCCTAATGCAGTTAACGATGAAAACCTGATATTCGAAACTAGTGCGGGAGTGGAAGCAGTCTCCAGTTTTGATCAGATGGGCATCCACATT

Ace file of the UniGene biog3_v1.0_unigene8805 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene9173	4/4

Source	Descriptions	Term	Type	Identity
AutoFact	DEAD-box ATP-dependent RNA helicase 2 n=6 Tax=BEP clade RepID=RH2_ORYSJ	-	-	91%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	86%
Blast2go	nicotiana eukaryotic translation initiation factor 4a	-	-	97%

Source	GOs	Term	Type	Identity
Blast2go	translational initiation	GO:0006413	Biological Process	97%
Blast2go	ATP-dependent helicase activity	GO:0008026	Molecular Function	97%
Blast2go	ATP binding	GO:0005524	Molecular Function	97%
Blast2go	translation initiation factor activity	GO:0003743	Molecular Function	97%

Source	InterPros	Term	Type	Identity
Sma3	Helicase, superfamily 1/2, ATP-binding domain	IPR014001	-	-
Sma3	Helicase, C-terminal	IPR001650	-	-
Sma3	DNA/RNA helicase, DEAD/DEAH box type, N-terminal	IPR011545	-	-
Sma3		IPR014021	-	-
Sma3	RNA helicase, DEAD-box type, Q motif	IPR014014	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NUU4

Fln msg: Distance to subject end: 364 aas, your sequence is shorter than subject: 48 - 408

Fln protein: MAAAGGSRNRNNNNGGRNPNAVNDENLIFETSAGVEAVSSFDQMGIHI

Protein Length: 49

Fln nts: CTGTTCTGTTATTTTTCGTAGGTGTGTCTGTTTTAGAATCA_-_ATGGCTGCCGCAGGCGGCAGTAGGAACCGTAACAACAACAATGGAGGGCGGAACCCTAATGCAGTTAACGATGAAAACCTGATATTCGAAACTAGTGCGGGAGTGGAAGCAGTCTCCAGTTTTGATCAGATGGGCATCCACATT

Fln Alignment:

Contig8805___DENLIFETSAGVEAVSSFDQMGI
A9NUU4_________________DENLIFETSPGVEVISSFDQMGI

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
82	20	80			0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain