SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene8775

Length: 1176 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene8775

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene14176	11/23
SustainPine v2.0	sp_v2.0_unigene17109	4/23
SustainPine v2.0	sp_v2.0_unigene61047	8/23

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative RNA binding protein [Arabidopsis thaliana]	-	-	1.0e-07	44%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	49%
Blast2go	glycine-rich rna-binding protein 7	-	-	6.73043e-14	57%

Source	GOs	Term	Type	e value	Identity
Blast2go	binding	GO:0005488	Molecular Function	6.73043e-14	57%

Source	InterPros	Term	Type	Identity
Sma3	RNA recognition motif domain	IPR000504	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	-
Sma3		IPR015465	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NNN7

Fln msg: your sequence is longer than subject: 260 - 215

Fln protein: MSGKEEYRVFVGGLSWDTSDRELESTFSRFGKVVDAQVMLDRETGRPRGFGFVTFADERSMESAISELHGRELNGRSISVNKAQPKVGGDSDYGYGGGYNSGRVDYSDRAPGRSDCFKCGRPGHWARECTVGGGGGGGRFSSRSRYSGGGRGDRFGGGDRYGDRYDDRYSGGRYSEKDRGVDSRDRYSSRDRYGSDRYGSDRYPQNGYGKERNYDRDGARGSDRYGSGGPARYEGSYRERSGPYDRPSRGRPSSYDDRY*

Protein Length: 261

Fln nts: ATGTAAAGGTAGCATCTCCAGGACACGCCGGAACGAGGCAGAGCGAGGAGCGGTGGAATCACAGGCTTAGAGTTGGGATACCGCTTTTTTGGCTGAACTGTAAGGTGAGGTGATTAGTGCTGCTGCTGGAAGCGATA_-_ATGTCTGGCAAGGAGGAATACCGTGTATTTGTGGGGGGGCTTTCTTGGGATACATCGGATAGAGAACTTGAGAGCACCTTCAGCCGTTTTGGCAAAGTCGTGGATGCTCAGGTTATGTTGGACCGAGAAACTGGTCGCCCACGTGGCTTTGGCTTTGTGACTTTTGCAGATGAGCGGTCCATGGAATCTGCCATTAGTGAATTGCATGGGAGGGAATTAAATGGCCGAAGCATATCTGTCAACAAAGCGCAACCTAAGGTAGGGGGTGATTCTGATTACGGGTATGGTGGGGGATACAATTCCGGGAGAGTAGATTATAGTGACAGAGCTCCAGGACGTTCTGATTGCTTTAAATGTGGTCGACCTGGACATTGGGCCCGAGAATGCACTGTGGGTGGAGGTGGTGGTGGTGGGCGTTTCTCATCTCGTTCCAGGTATAGTGGTGGTGGACGAGGAGATCGTTTTGGAGGGGGGGATCGTTATGGTGATCGCTATGATGACCGCTACAGTGGTGGTCGTTATAGTGAAAAAGATCGTGGTGTTGATAGTCGGGACAGGTATAGCAGCCGTGACCGATATGGCAGTGATCGTTATGGTTCTGATCGCTATCCACAAAATGGATATGGAAAGGAAAGAAACTATGATCGTGATGGTGCTAGGGGAAGTGATCGATATGGCAGTGGTGGTCCTGCCCGCTATGAGGGAAGCTACAGAGAGAGATCAGGACCCTATGATCGTCCAAGTCGGGGAAGACCATCTTCATATGATGATCGCTATTGA___TGACTGAATACTGAAAACTTGTTCCAGTTTGTATTTATTTTTGTGGAAATTTCGATGAACAATACCTGCAGACCATATTTATTGTAGGATGAAAAACTTGTCAATGTTGTCATGGTTGTGGCCATGCCGATATTTCAGCTACTACATGGTCTTGACCGTATGTTTTTCATGTTGATAGGCTTTTTTTCAGCAGCAGTTGGCCCATGCAATTCAGTTGAGCATGGTTTTGGACTTGAGCATTTAAGAGCATCTATACATT

Fln Alignment:

Contig8775___MSGKEEYRVFVGGLSWDTSDRELESTFSRFGKVVDAQVMLDRETGRPRGFGFVTFADERSMESAISELHGRELNGRSISVNKAQPKVXXXXXXXXXXXXXXXRVDYSDR--------------APGRSDCFKCGRPGHWAREC
A9NNN7_________________MSDAPEYRCFVGGLSWSTSDRTLEDAFHKFGHLIEAKVVVDRDTGRSRGFGFVTFDDKKSMEDAIDSMHGMSLDGRSITVDRARPK--------SDGEDRGDRGDRGDRGYGGGSGRGYSGGGGGGSSECFKCGQRGHFAREC

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
87	25			75	0.996473
88		25		75	0.996473
89	25			75	0.996473
460	20		80		0.995493
821	20		80		0.995493
822		20		80	0.995493
823	20		80		0.995493
824			80	20	0.995493
854			80	20	0.995493
855	80			20	0.995493

SSRs (tot: 1)

Start position	End position	Sequence	Length
537	550	GGT GGT GGT GGT GG	14

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain