SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene8719

Length: 277 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene8719
AATGTGGTTTTTCCCCAAATGAAGAAATTGAGCTTTTTGAGGAAATAAAGTTTGAACCAAATGTTATGTGTGAGCATGTTGACAAGAGACTTACATTTCGTGGCAGCCAACTTGAAGATGGAGATATTATCTGCTACCAAAAGGTTCTTTCAAGGGAAGAAGAGGAACGCTATAGATATCCAGATGTTCCATCATTTCTTGAATATGTTCACAACCGACAGATTGTTCATTTTCGTTGCCTGGATAAGCCAAAGGAAGATGAATTTTGTCTTACATT

Ace file of the UniGene biog3_v1.0_unigene8719 (antisense)

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene6917	6/6

Source	Descriptions	Term	Type	Identity
AutoFact	putative ubiquitin carboxyl-terminal hydrolase [Arabidopsis thaliana]	-	-	74%
FL-Next	sp=Ubiquitin carboxyl-terminal hydrolase 13; Arabidopsis thaliana (Mouse-ear cress).	-	-	73%
Blast2go	ubiquitin carboxyl-terminal hydrolase 12-like	-	-	90%

Source	ECs	Term	Type	e value	Identity
Blast2go	Ubiquitin thiolesterase.	EC:3.1.2.15	-	0.0	90%

Source	GOs	Term	Type	e value	Identity
Blast2go	ubiquitin-dependent protein catabolic process	GO:0006511	Biological Process	0.0	90%
Blast2go	ubiquitin thiolesterase activity	GO:0004221	Molecular Function	0.0	90%

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, GATA-type	IPR000679	-	-
Sma3	Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2	IPR001394	-	-
Sma3	MATH	IPR002083	-	-
Sma3	Tify	IPR010399	-	-
Sma3	CCT domain	IPR010402	-	-
Sma3	TRAF-type	IPR013322	-	-
Sma3	Small acid-soluble spore protein, alpha/beta-type, conserved site	IPR018126	-	-
Sma3	Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2, conserved site	IPR018200	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q84WU2

Fln msg: Distance to subject end: 295 aas, your sequence is shorter than subject: 91 - 1115

Fln protein: CGFSPNEEIELFEEIKFEPNVMCEHVDKRLTFRGSQLEDGDIICYQKVLSREEEERYRYPDVPSFLEYVHNRQIVHFRCLDKPKEDEFCLT

Protein Length: 92

Fln nts: AATGTGGTTTTTCCCCAAATGAAGAAATTGAGCTTTTTGAGGAAATAAAGTTTGAACCAAATGTTATGTGTGAGCATGTTGACAAGAGACTTACATTTCGTGGCAGCCAACTTGAAGATGGAGATATTATCTGCTACCAAAAGGTTCTTTCAAGGGAAGAAGAGGAACGCTATAGATATCCAGATGTTCCATCATTTCTTGAATATGTTCACAACCGACAGATTGTTCATTTTCGTTGCCTGGATAAGCCAAAGGAAGATGAATTTTGTCTTACATT

Fln Alignment:

Contig8719___GFSPNXXXXXXXXXXXEPNVMCEHVDKRLTFRGSQLEDGDIICYQKVLSREEEERYRYPDVPSFLEYVHNRQIVHFRCLDKPKEDEFCL
Q84WU2_________________GFAPDEEIELFEEIKFEPCVMCEQIDKKTSFRLCQIEDGDIICYQKPLSIEESE-FRYPDVPSFLEYVQNRELVRFRTLEKPKEDEFTM

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
133	66			33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain