SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene8620

Length: 1016 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene8620

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene878	11/11

Source	Descriptions	Term	Type	Identity
AutoFact	protein TRANSPARENT TESTA 12 [Arabidopsis thaliana] sp\|Q9LYT3.1\|TT12_ARATH RecName: Full=Protein TRANSPARENT TESTA 12; AltName: Full=MATE efflux family protein TT12; AltName: Full=Protein DTX41 emb\|CAB86931.1\| putative protein [Arabidopsis thaliana] emb\|C	-	-	59%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	55%
Blast2go	transparent testa 12	-	-	75%

Source	GOs	Term	Type	Identity
Blast2go	maintenance of seed dormancy	GO:0010231	Biological Process	75%
Blast2go	proanthocyanidin biosynthetic process	GO:0010023	Biological Process	75%
Blast2go	drug transmembrane transport	GO:0006855	Biological Process	75%
Blast2go	drug transmembrane transporter activity	GO:0015238	Molecular Function	75%
Blast2go	solute:hydrogen antiporter activity	GO:0015299	Molecular Function	75%
Blast2go	plant-type vacuole membrane	GO:0009705	Cellular Component	75%

Source	InterPros	Term	Type	Identity
Sma3	Ribosome-binding factor A	IPR000238	-	-
Sma3	GPCR, rhodopsin-like, 7TM	IPR000276	-	-
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Peptidase M1, alanine aminopeptidase/leukotriene A4 hydrolase	IPR001930	-	-
Sma3	Multi antimicrobial extrusion protein	IPR002528	-	-
Sma3	Peptidase M1, alanyl aminopeptidase	IPR012779	-	-
Sma3	Peptidase M1, membrane alanine aminopeptidase, N-terminal	IPR014782	-	-
Sma3		IPR015521	-	-
Sma3	Aldehyde dehydrogenase, conserved site	IPR016160	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3	AT hook, DNA-binding motif	IPR017956	-	-
Sma3	Proteinase inhibitor I25, cystatin, conserved site	IPR018073	-	-
Sma3	Ribosomal protein S2, conserved site	IPR018130	-	-
Sma3	Chaperonin Cpn60, conserved site	IPR018370	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5ADQ8

Fln msg: Distance to subject end: 99 aas, your sequence is shorter than subject: 338 - 517

Fln protein: AGHLGELQLAGASIASVAIQGLAYGIMLGMATAVQTVCGQAYGAKQYSMLGVICQKSMIIMTGTAILLGILYYFADPVLIAIGQSKEISAAGGIFAKGLIPQLFAFALNCPIQRFLQAQNIVAPIAYIAVGTCLFHILITWVAVDKLGFGLLGIALIVSLTWWVLVITTALYIFYSPYCRHTWTGFTLKAFTGLWSYFKLTLASAVMLTLEIWYIEVLVLVSGLLPNAEVALDSISVCMNYYNWELMAMLGLSTAASIRVGNELGARRPKTARFSVIVVVVTCFIISVILAVGILILKKELAMAFTSTTVVIRAVYALIPLLAISVLLNGTQPILSGV

Protein Length: 339

Fln nts: GCTGGTCATCTTGGAGAGTTGCAGCTTGCAGGAGCATCCATTGCTAGTGTGGCCATTCAAGGATTGGCCTATGGAATTATGCTTGGAATGGCAACAGCAGTCCAGACTGTGTGTGGGCAAGCTTACGGTGCTAAACAGTACAGCATGCTTGGAGTCATCTGTCAGAAGTCCATGATAATAATGACTGGAACTGCAATACTCCTGGGCATCCTCTACTATTTTGCAGATCCAGTATTGATTGCCATAGGGCAGAGTAAAGAAATCTCTGCTGCAGGAGGTATTTTTGCCAAAGGTCTTATTCCTCAGTTGTTTGCTTTTGCCCTCAATTGCCCCATACAGAGGTTTTTGCAGGCTCAGAACATAGTGGCCCCTATTGCCTATATTGCTGTTGGGACATGTCTATTCCATATATTGATCACCTGGGTGGCAGTAGACAAGCTAGGATTTGGCCTGCTAGGGATAGCCCTAATAGTGAGTTTGACTTGGTGGGTTCTGGTCATTACTACTGCCTTGTATATATTCTATAGCCCATACTGCAGGCATACATGGACGGGCTTCACCTTGAAGGCCTTCACAGGACTCTGGTCATACTTCAAGTTAACTCTGGCATCGGCTGTTATGCTAACTTTGGAAATATGGTACATTGAAGTATTGGTGCTTGTATCGGGTTTGCTGCCAAATGCAGAGGTCGCTCTGGATTCCATTTCTGTTTGCATGAATTATTACAACTGGGAGTTAATGGCAATGTTGGGTCTCAGTACAGCTGCAAGTATAAGAGTGGGTAATGAGCTGGGAGCCAGGAGACCTAAAACTGCAAGATTTTCAGTTATAGTTGTGGTGGTCACTTGCTTCATAATAAGTGTCATACTTGCCGTTGGGATTCTGATACTGAAGAAAGAACTCGCCATGGCATTCACAAGCACCACTGTGGTTATACGCGCAGTCTATGCATTGATACCTCTACTTGCAATATCTGTTCTCTTGAATGGCACCCAACCTATTCTCTCAGGGGTGGC

Fln Alignment:

Contig8620___GHLGELQLAGASIASVAIQGLAYGIMLGMATAVQTVCGQAYGAKQYSMLGVICQKSMIIMTGTAILLGILYYFADPVLIAIGQSKEISAAGGIFAKGLIPQLFAFALNCPIQRFLQAQNIVAPIAYIAVGTCLFHILITWVAVDKLGFGLLGIALIVSLTWWVLVITTALYIFYSPYCRHTWTGFTLKAFTGLWSYFKLTLASAVMLTLEIWYIEVLVLVSGLLPNAEVALDSISVCMNYYNWELMAMLGLSTAASIRVGNELGARRPKTARFSVIVVVVTCFIISVILAVGILILKKELAMAFTSTTVVIRAVYALIPLLAISVLLNGTQPILSGV
D5ADQ8_________________GHLGNLELAAASLGNTGIQVFAYGLMLGMGSAVETLCGQAYGAKTYGMLGIYLQRSTILLMVTGIPLTIIYAFSKPLLVLLGESETIAAAAAIFVYGLIPQIFAYAANFPIQKFLQAQSIVAPSAYISFCTIFVHVFLTWLAVYKLGFGIFGAALVLSLSWWIVVIAQFIYILKSPRCKYTWTGFSLQAFHGLPSFLKLSAASAVMLCLETWYFQILVLLAGLLDNPEIALDSLSICMSVLGWLFMISVGFNAAASVRVSNELGAGNPRAASFSVKIVTLMSFIISVIFGIVIILLRNVMSYAFTEGTEVADAVAELSPFLAFSIILNGVQPVLSGV

SNPs (tot: 13)

Position	A %	C %	G %	T %	Probability
171	25	75			0.996473
320	25	75			0.996473
322	25	75			0.996473
324		75		25	0.996473
336	33		66		0.997452
339			66	33	0.997452
340	66			33	0.997452
506	16	83			0.994512
509		83		16	0.994512
687	25		75		0.996473
690			75	25	0.996473
691	75			25	0.996473
886	25		75		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain