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UniGene Name: biog3_v1.0_unigene8593
Length: 209 nt
 UniGene Fasta
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| >biog3_v1.0_unigene8593
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Ace file of the UniGene biog3_v1.0_unigene8593
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If you push the Download ace button, you will download an ace file of this UniGene.
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Go to the Tablet ACE viewer Web
| Annotations |
|---|
| Parent Assembly | Parent UniGene | Reads (related/total) |
|---|---|---|
| SustainPine v2.0 | sp_v2.0_unigene1837 | 3/3 |
| Source | Descriptions | Term | Type | e value | Identity |
|---|---|---|---|---|---|
| AutoFact | formyltetrahydrofolate deformylase, putative [Brassica oleracea] | - | - | 0.0 | 73% |
| Blast2go | formyltetrahydrofolate deformylase | - | - | 0.0 | 83% |
| Source | ECs | Term | Type | e value | Identity |
|---|---|---|---|---|---|
| Blast2go | EC:3.5.1.1- | - | 0.0 | 83% | |
| Blast2go | Transferases, Transferring one-carbon groups, Hydroxymethyl-, formyl- and related transferases. | EC:2.1.2.- | - | 0.0 | 83% |
| Source | KEGGs | Term | Type | e value | Identity |
|---|---|---|---|---|---|
| Blast2go | Amino sugar and nucleotide sugar metabolism | 00520 | 0.0 | 83% | |
| Blast2go | Transferases, Transferring one-carbon groups, Methyltransferases. | EC:2.1.1.- | - | 0.0 | 83% |
| Source | GOs | Term | Type | e value | Identity |
|---|---|---|---|---|---|
| Blast2go | tetrahydrofolate metabolic process | GO:0046653 | Biological Process | 0.0 | 83% |
| Blast2go | methylation | GO:0032259 | Biological Process | 0.0 | 83% |
| Blast2go | photorespiration | GO:0009853 | Biological Process | 0.0 | 83% |
| Blast2go | 'de novo' IMP biosynthetic process | GO:0006189 | Biological Process | 0.0 | 83% |
| Blast2go | formyltetrahydrofolate deformylase activity | GO:0008864 | Molecular Function | 0.0 | 83% |
| Blast2go | hydroxymethyl-, formyl- and related transferase activity | GO:0016742 | Molecular Function | 0.0 | 83% |
| Blast2go | methyltransferase activity | GO:0008168 | Molecular Function | 0.0 | 83% |
| Blast2go | mitochondrion | GO:0005739 | Cellular Component | 0.0 | 83% |
| Source | InterPros | Term | Type | e value | Identity |
|---|---|---|---|---|---|
| Sma3 | Phosphoribosylglycinamide formyltransferase, active site | IPR001555 | - | 0.0 | - |
| Sma3 | Formyl transferase, N-terminal | IPR002376 | - | 0.0 | - |
| Sma3 | Amino acid-binding ACT | IPR002912 | - | 0.0 | - |
| Sma3 | Formyltetrahydrofolate deformylase | IPR004810 | - | 0.0 | - |
| Full-Lengther Next Prediction |
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Fln status: unknown
Fln database: testcode
Fln msg: Non coding ORF found >= 200 nt
Test code: 0
Test Code was used to find complete genes when there was not found a reliable orthologue. The best ORF (Open Reading Frame) is shown, and only ORFs > 200pb were analyzed. Your ORF will be more reliable if a stop codon was found before the start codon. A Test Code value > 0.95 means the ORF is probably coding. A Test Code value < 0.74 means the ORF is probably non-coding. Test Code values in between 0.74 and 0.95 mean it is uncertain whether the ORF is coding or not.
| SNPs (tot: 1) |
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| Position | A % | C % | G % | T % | Probability |
|---|---|---|---|---|---|
| 202 | 66 | 33 | 0.997452 |
Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain
