SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene8523

Length: 386 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene8523
AATGTATTCAATGCAACAGGCTTCTTGGAGAGACTGAGAGACAAGCGAGTCATGCTAGTGGGGGACTCGATGAATAGGAACCAGTTTGAGTCCATGCTTTGCATTCTTCGGGAAGGTCTATCTAATAAGAGCAGGATGTTTGAGACTCATGGCTATCGCATCACGAAAGGCAGAGGATACTACGTTTTCAAATTTATGGATTATAATTGCACTGTTGAATTCAGTCGGTCGCACTTCTTAGTCAGGGAAGGTATAAAGGTTAGACCTACTGGGAAGAAGAGGGCTACATTGATGATTGATCAAATAGATAAAATGGCACCAAGGTACAAGAGAGCGGACATTCTGATTTTCAACACAGGGCATTGGTGGGCACATGGAAAGACATC

Ace file of the UniGene biog3_v1.0_unigene8523 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene11442	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	protein trichome birefringence-like 5 [Arabidopsis thaliana] gb\|AED92864.1\| protein trichome birefringence-like 5 [Arabidopsis thaliana]	-	-	65%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	52%
Blast2go	protein trichome birefringence-like 5	-	-	81%

Source	ECs	Term	Type	e value	Identity
Blast2go	RNA-directed DNA polymerase.	EC:2.7.7.49	-	0.0	81%

Source	GOs	Term	Type	Identity
Blast2go	RNA-dependent DNA replication	GO:0006278	Biological Process	81%
Blast2go	RNA binding	GO:0003723	Molecular Function	81%
Blast2go	RNA-directed DNA polymerase activity	GO:0003964	Molecular Function	81%

Source	InterPros	Term	Type	Identity
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Protein kinase C-like, phorbol ester/diacylglycerol binding	IPR002219	-	-
Sma3		IPR004253	-	-
Sma3	WRC	IPR014977	-	-
Sma3		IPR015706	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LL59

Fln msg: Distance to subject end: 173 aas, your sequence is shorter than subject: 128 - 484

Fln protein: NVFNATGFLERLRDKRVMLVGDSMNRNQFESMLCILREGLSNKSRMFETHGYRITKGRGYYVFKFMDYNCTVEFSRSHFLVREGIKVRPTGKKRATLMIDQIDKMAPRYKRADILIFNTGHWWAHGKT

Protein Length: 129

Fln nts: AATGTATTCAATGCAACAGGCTTCTTGGAGAGACTGAGAGACAAGCGAGTCATGCTAGTGGGGGACTCGATGAATAGGAACCAGTTTGAGTCCATGCTTTGCATTCTTCGGGAAGGTCTATCTAATAAGAGCAGGATGTTTGAGACTCATGGCTATCGCATCACGAAAGGCAGAGGATACTACGTTTTCAAATTTATGGATTATAATTGCACTGTTGAATTCAGTCGGTCGCACTTCTTAGTCAGGGAAGGTATAAAGGTTAGACCTACTGGGAAGAAGAGGGCTACATTGATGATTGATCAAATAGATAAAATGGCACCAAGGTACAAGAGAGCGGACATTCTGATTTTCAACACAGGGCATTGGTGGGCACATGGAAAGACATC

Fln Alignment:

Contig8523___FNATGFLERLRDKRVMLVGDSMNRNQFESMLCILREGLSNKSRMFETHGYRITKGRGYYVFKFMDYNCTVEFSRSHFLVREGIKVR--PTGKKRATLMIDQIDKMAPRYKRADILIFNTGHWWAHGKT
B8LL59_________________FNANTFLERIRNSRVVFVGDSIGRNQWESLICMLAEAIPNKARIYEVNGNPITKHKGFLSFKFEDYNCTVEYYRAPFLVFEGRPPRGAPPG-VRTTLKVDAMDYTSHLWSNGDVLIFNTGHWWNYEKT

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
212	25	75			0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain