SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene8504

Length: 525 nt

UniGene Fasta

>biog3_v1.0_unigene8504
AATGTGGTCATTCCGGCGCCGGTCAGCTATTAATGAGAATCAGCCTGGGCTCGCAATGGCTGGATTTGTGGAGGTTTTATCAGCATTGCAGTGCATTGAGCAGAATGAAGTATTAACATATGAGCAAGTGCTGATGCTGGAGGAAACTCTTCTCTCAAATGGAATAAGCCTGCATGATCAACACAGTGCTATGCGACTCGATATAGACAACATGTCATATGAGGAATTGTTAGCTCTAGAGGAACAGATCGGCTATGTTAGCACAGGACTTAGTGAGGAGACTATTTCCAAGTGTTTAGAGAAAAGCTTGTACTCAAAAACAGAGCATGCTTCTCAGAGTATGGATATTGAAGTCAAATGCAGCATTTGCCAGGAAGAGTATGAAGAAAGAGATGAGCTGGGCAGTTTAAAGTGCAGTCACAGTTATCACGAGGCCTGCATCAAGCAGTGGTTGCTTCAGAAAAACAAGTGTCCAGTCTGCAATATTTCTGTCATTTCATAGCAGGAAAATTCTGGTCTGCTGCA

Ace file of the UniGene biog3_v1.0_unigene8504

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene12485	3/3

Source	Descriptions	Term	Type	e value	Identity
AutoFact	RING/U-box domain-containing protein [Arabidopsis thaliana] ref\|NP_974832.1\| RING/U-box domain-containing protein [Arabidopsis thaliana] gb\|AAM97093.1\| RING finger-like protein [Arabidopsis thaliana] gb\|AAT47817.1\| At5g24870 [Arabidopsis thaliana] gb\|AED9	-	-	3.00004e-41	47%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	44%
Blast2go	zinc finger family protein	-	-	0.0	65%

Source	GOs	Term	Type	e value	Identity
Blast2go	metal ion binding	GO:0046872	Molecular Function	0.0	65%

Source	InterPros	Term	Type	Identity
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	NB-ARC	IPR002182	-	-
Sma3	Aspartate/ornithine carbamoyltransferase	IPR006130	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-
Sma3	Hemopexin/matrixin, conserved site	IPR018486	-	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5ADP2

Fln msg: your sequence is shorter than subject: 167 - 282

Fln protein: MWSFRRRSAINENQPGLAMAGFVEVLSALQCIEQNEVLTYEQVLMLEETLLSNGISLHDQHSAMRLDIDNMSYEELLALEEQIGYVSTGLSEETISKCLEKSLYSKTEHASQSMDIEVKCSICQEEYEERDELGSLKCSHSYHEACIKQWLLQKNKCPVCNISVIS*

Protein Length: 168

Fln nts: AATGTGGTCATTCCGGCGCCGGTCAGCTATTAATGAGAATCAGCCTGGGCTCGCAATGGCTGGATTTGTGGAGGTTTTATCAGCATTGCAGTGCATTGAGCAGAATGAAGTATTAACATATGAGCAAGTGCTGATGCTGGAGGAAACTCTTCTCTCAAATGGAATAAGCCTGCATGATCAACACAGTGCTATGCGACTCGATATAGACAACATGTCATATGAGGAATTGTTAGCTCTAGAGGAACAGATCGGCTATGTTAGCACAGGACTTAGTGAGGAGACTATTTCCAAGTGTTTAGAGAAAAGCTTGTACTCAAAAACAGAGCATGCTTCTCAGAGTATGGATATTGAAGTCAAATGCAGCATTTGCCAGGAAGAGTATGAAGAAAGAGATGAGCTGGGCAGTTTAAAGTGCAGTCACAGTTATCACGAGGCCTGCATCAAGCAGTGGTTGCTTCAGAAAAACAAGTGTCCAGTCTGCAATATTTCTGTCATTTCATAG___CAGGAAAATTCTGGTCTGCTGCA

Fln Alignment:

Contig8504___LDIDNMSYEELLALEEQIGYVSTGLSEETISKCLEKSLYSKTEHASQSMDIEVKCSICQEEYEERDELGSLKCSHSYHEACIKQWLLQKNKCPVCNISV
D5ADP2_________________VDPDNMLYEELVALSEVVGTESRGLAPDLISSLPLSKFVPETPSSSNSE----RCVICRLEYEGGDIILTLPCKHQYHSDCIKNWLQIKKVCPVCNVEV

SNPs (tot: 3)

Position	A %	C %	T %	Probability
219	25		75	0.996473
223	75		25	0.996473
251		75	25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain