SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene8497

Length: 1141 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene8497

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene7412	31/31

Source	Descriptions	Term	Type	Identity
AutoFact	Ferredoxin--NADP reductase n=1 Tax=Ricinus communis RepID=B9SB31_RICCO	-	-	78%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	48%
Blast2go	ferredoxin--nadp root chloroplastic-like	-	-	87%

Source	ECs	Term	Type	e value	Identity
Blast2go	Ferredoxin--NADP(+) reductase.	EC:1.18.1.2	-	0.0	87%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Photosynthesis	00195		0.0	87%
Blast2go	Metabolic pathways	01100		0.0	87%

Source	GOs	Term	Type	Identity
Blast2go	transport	GO:0006810	Biological Process	87%
Blast2go	photosynthesis	GO:0015979	Biological Process	87%
Blast2go	electron transport chain	GO:0022900	Biological Process	87%
Blast2go	flavin adenine dinucleotide binding	GO:0050660	Molecular Function	87%
Blast2go	NADP binding	GO:0050661	Molecular Function	87%
Blast2go	ferredoxin-NADP+ reductase activity	GO:0004324	Molecular Function	87%
Blast2go	thylakoid membrane	GO:0042651	Cellular Component	87%
Blast2go	chloroplast	GO:0009507	Cellular Component	87%

Source	InterPros	Term	Type	Identity
Sma3	Ferredoxin reductase-type FAD-binding domain	IPR017927	-	-
Sma3	Flavoprotein pyridine nucleotide cytochrome reductase	IPR001709	-	-
Sma3	Ferredoxin-NADP+ reductase	IPR012146	-	-
Sma3	Ferredoxin Reductase	IPR015701	-	-
Sma3	Oxidoreductase FAD/NAD(P)-binding	IPR001433	-	-

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NM10

Fln msg: Distance to subject end: 38 aas, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 282 - 344

Fln protein: MTKHFIIVKFQDSTLQFSGKAWALQCPGKPRLKSKSKVWMSVQQVTTKSKVSVTPLNLEDAKDPPLNLYRPKEPYTATIVSVESLVGPKAPGETCQIVIDHGGNVPYWEGQSYGVIPPGENPKKPGTPNTVRLYSIASTRYGDSFDGKTGTLCVRRAVYYDPVTGKEDPSKNGICSNYLCDRKPGDKVKITGPSGKVMLLPEDDPNATHIMIATGTGIAPFRGYLRRMFMEDVPSFKFGGLAWLFLGVANTDSLLYNDEITEYTKQYPKNFRYDTALSREHK

Protein Length: 283

Fln nts: ATTGAATCACTATTGAATATTGCCATGTGCCCTTTCCGTTGTGCCTTTTCATAGGACGAAGGGGAAAGAGCCAGCATCTGCCCATTAAAGCATTGGAAAGATCAAGCAGCCTTCAAATTGGGTTTATATAAATTTGATGTCACCACCCTCTCACTCATTATAGTGTGGGAATTGATATTTGATTCAATCATACCTCCTCCTCAACACTTCTATTCTGTTCTGTGGAGATGGCTCATCCCATTGTCATCAAGGGTGCCTTCTGTATGCCTCACGTGACTACTTCCTTCGCAAACA_-_ATGACAAAGCATTTTATAATTGTAAAATTCCAGGATTCAACTCTGCAATTCTCTGGCAAAGCATGGGCACTCCAATGTCCAGGGAAGCCAAGGTTGAAGAGCAAGTCAAAAGTGTGGATGTCAGTACAACAGGTAACTACAAAGTCTAAGGTTAGTGTTACCCCTCTCAATCTCGAGGATGCAAAAGATCCTCCTCTCAATTTGTACAGGCCTAAAGAGCCCTACACAGCAACTATTGTCTCTGTGGAGAGTCTTGTTGGTCCAAAAGCACCAGGAGAAACTTGTCAAATTGTTATTGATCATGGAGGAAATGTTCCATATTGGGAAGGTCAGAGTTATGGGGTCATTCCTCCCGGTGAGAACCCCAAGAAACCTGGCACACCCAATACTGTTCGTCTTTACTCCATTGCTTCAACAAGATATGGAGATTCCTTTGATGGGAAAACAGGAACTTTGTGTGTTAGAAGAGCTGTTTACTATGATCCAGTGACTGGAAAGGAGGACCCGTCCAAGAATGGAATTTGCAGCAACTATCTCTGTGACAGAAAACCAGGAGACAAGGTTAAAATTACAGGTCCATCTGGAAAAGTAATGCTTCTACCAGAAGATGATCCAAATGCAACCCACATAATGATAGCCACTGGTACAGGAATAGCTCCTTTTAGGGGATACCTACGGAGAATGTTTATGGAGGATGTTCCATCATTCAAATTTGGAGGACTTGCTTGGCTTTTCCTGGGAGTTGCTAACACCGATAGTCTTCTCTACAATGATGAAATTACAGAGTATACAAAGCAGTACCCTAAGAACTTTAGATACGATACTGCATTGAGTAGAGAGCATAAGA

Fln Alignment:

Contig8497___QVTTKSKVS--VTPLNLEDAKDPPLNLYRPKEPYTATIVSVESLVGPKAPGETCQIVIDHGGNVPYWEGQSYGVIPPGENPKKPGTPNTVRLYSIASTRYGDSFDGKTGTLCVRRAVYYDPVTGKEDPSKNGICSNYLCDRKPGDKVKITGPSGKVMLLPEDDPNATHIMIATGTGIAPFRGYLRRMFMEDVPSFKFGGLAWLFLGVANTDSLLYNDEITEYTKQYPKNFRYDTALSRE
A9NM10_________________QVTTEAPATTKVVKISKKNEEGVVVNKYKPKTPYIGRVLLNTKITADDAPGETWHMVFSTEGELPYREGQSIGVIPTGID--KNGKPHKLRLYSIASSALGDFGDSKTVSLCVKRLVY----TNDQGEVVKGVCSNFLCDLKPGEEVTITGPVGKEMLMPVD-PNATIIMLATGTGIAPFRGYLWKMFFEKHPDYKFNGLAWLFLGVPTSSSLIYKEEFEKMKEKSPDKIRVDFAVSRE

SNPs (tot: 27)

Position	A %	C %	G %	T %	Probability
350	33		66		0.997452
354	80			20	0.995493
355	80			20	0.995493
473	33		66		0.997452
477		66		33	0.997452
564	20	80			0.995493
566		80		20	0.995493
567		80	20		0.995493
599			85	14	0.993533
768	10			90	0.90298
770		10		90	0.90298
772		90		10	0.90298
822	14		85		0.993533
825	85			14	0.993533
826		85		14	0.993533
869			71	28	1.0
870			71	28	1.0
904	14			85	0.993533
905		14	85		0.993533
908		85		14	0.993533
950		16	83		0.994512
951	16	83			0.994512
953		83		16	0.994512
965		20		80	0.995493
967		75		25	0.996473
968		75		25	0.996473
1073	66			33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain