SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene8473

Length: 2080 nt

UniGene Fasta

>biog3_v1.0_unigene8473
AAAAAGAGAGAGGGCCTTGGCTTTCCAACCTTACTTATGGGGTATTCGGTTTAGGCAACAGACAATATAAGCATTTCAATAAGGTTGCTTGCACAGTAGATGAAGCATTAAGTGAACAAGGTGGGAAACGGCTTGTTCCAGTGGGCCTTGGTGATGATGATCAGTGCATTGAAGATGACTTTACTGCTTGGCGAGAGCAGGTTTGGCCTGAGCTAGATCAGTTATTGCGTGACGAAGATGATCAACCCTCAAGTGCTACACCTTATACAGCAGCAATACCTCAGTACCGGGTAGAAATTCATGATTCTTCAGTTCCACTTTATGAGGAAACTAATGTAAAGCAGAATGGTCAAGCCATTTATGATATCCATCATCCTTGCAGAGCAAACGTAGCAGTGCGAAGAGAACTTCATACACCATTGTCTGACCGTTCTTGCATTCATTTGGAATTTGATATCACAGATACTGGCGTTACGTATGAGACCGGAGATCATGTTGGCGTCTATGCAGAAAACTTAGATGAAACTGTGGAGGAAGCTGCAAAGTTACTAGGCTACCCACTAGACACAATAATTTCAGTCCACAGTGACAATGAAGATGGTACGCCTCTTGCTGGGAGCTCCTTGCCACCACCCTTCCCTGGTCCATGCACTCTGCAGACTGCTCTTGCTCGTTTTGCAGATTTGTTGAATCCTCCTCGAAAGGCTGCCTTGGTTGCATTGGCTAGTCATGCATCTGATCCAGCTGAAGCTGAGAGGTTGAAGTTTCTTTCATCACCAGCCGGAAAGGATGAGTACTCCCAATGGATTACTGGGAGTCAAAGGAGTCTTTTAGAAGTAATGGCAGAATTTCCATCTGCAAAACCACCTCTCGGTGTCTTCTTTGCAGCAATTGCCCCACGTCTGCAACCTCGATATTACTCTATTTCTTCTTCTCCAAAGTTTTCACCCAATAGAATACATGTAACGTGTGCTCTGGTTTATGGGCCTAGTCCAACTGGCAGAATCCACAAAGGTGTTTGTTCCAATTGGATGAAGAATTCGGTGCCTTCTGAGGAAATCCTTGATTGTAGCTGGGCACCAGTCTTTGTTAGACAGTCAAATTTCAAATTGCCAGCAGATCCTTCAGTTCCTATTGTTATGGTGGGCCCTGGAACTGGTTTAGCACCTTTTAGAGGTTTTTTGCAGGAAAGAGCAGCACTTCAAGAATCTGGAGAGAAGCTCGGGCCAGCTGTTCTTTTCTTTGGGTGCAGGAATCGCCAGATGGACTACATTTATGAAGATGAACTGAAGAACTATGTGGATACTGGCGTATTGACTGATCTTGTTCTTGCTTTCTCTCGTGAAGGAGCAACCAAAGAGTATGTGCAGCACAAGATAGCAGAGAAGGCATCCTATATTTGGAATCTCATTTCTCAAGGTGGCTATCTCTATGTATGTGGTGATGCCAAGGGCATGGCTAGGGATGTGCACAGGACCCTACACAATATCATCCAGGAGCAGGAGTCGGTGGATAGCACCAGTGCAGAGGCTACAGTGAAGAAATTACAGACAGAAGGAAGATATTTACGAGATGTATGGTAATTGAGTGAATTTTGTTCTCGGTCAGTTCAATCTCATCTCGTGCAGAATTCGGTAAGAAGATTCAGGAAAAGAGAAAAGCCTAGCCAAGTATTTATTTGGGAAGAAATCTCCCGGTAAACTGATGCTCAAGTTGATTTCTCACAGAAGTGTGGGATCTTTACAACTCCAAATACTGCATTCCAGGATTTGCTATCACTGTGCCCTTTCGAATTTTCTAGCACCAGTATCACATTAGGACTGGTCTAGAATTGTATTCTTAATTCATTTGTCTAAGAGTTTAGTACAACAAAGCTAAATATCATGCCCTTCAGTTAGAAAACAACTCTCCACGTCATAGAATTTTTAATATATATCTTGGTATGATCTTTTAATACCATACTCGACCGTTCATAATCTACATGGAAAGCTGTCCCTTTCCAGTTTGATATTGTGTTTATCTTCCTTCTATAATGGCATATAAGACACAATACTGAATTGAAGCTTGCGGTGTCATGATA

Ace file of the UniGene biog3_v1.0_unigene8473

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene26935	102/108
SustainPine v2.0	sp_v2.0_unigene62362	2/108
SustainPine v2.0	sp_v2.0_unigene78526	3/108
SustainPine v2.0	sp_v2.0_unigene80746	1/108

Source	Descriptions	Term	Type	Identity
AutoFact	NADPH--cytochrome P450 reductase n=1 Tax=Pseudotsuga menziesii RepID=Q40916_PSEMZ	-	-	85%
FL-Next	sp=NADPH--cytochrome P450 reductase; Pseudotsuga menziesii (Douglas-fir) (Abies menziesii).	-	-	92%
Blast2go	nadph--cytochrome p450 reductase-like	-	-	85%

Source	InterPros	Term	Type	Identity
Sma3	FAD-binding, type 1	IPR003097	-	-
Sma3	Ferredoxin reductase-type FAD-binding domain	IPR017927	-	-
Sma3	Flavodoxin	IPR001094	-	-
Sma3	Flavodoxin/nitric oxide synthase	IPR008254	-	-
Sma3	Flavoprotein pyridine nucleotide cytochrome reductase	IPR001709	-	-
Sma3		IPR015702	-	-
Sma3	Oxidoreductase FAD/NAD(P)-binding	IPR001433	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: Q40916

Fln msg: your sequence is shorter than subject: 527 - 719

Fln protein: KERGPWLSNLTYGVFGLGNRQYKHFNKVACTVDEALSEQGGKRLVPVGLGDDDQCIEDDFTAWREQVWPELDQLLRDEDDQPSSATPYTAAIPQYRVEIHDSSVPLYEETNVKQNGQAIYDIHHPCRANVAVRRELHTPLSDRSCIHLEFDITDTGVTYETGDHVGVYAENLDETVEEAAKLLGYPLDTIISVHSDNEDGTPLAGSSLPPPFPGPCTLQTALARFADLLNPPRKAALVALASHASDPAEAERLKFLSSPAGKDEYSQWITGSQRSLLEVMAEFPSAKPPLGVFFAAIAPRLQPRYYSISSSPKFSPNRIHVTCALVYGPSPTGRIHKGVCSNWMKNSVPSEEILDCSWAPVFVRQSNFKLPADPSVPIVMVGPGTGLAPFRGFLQERAALQESGEKLGPAVLFFGCRNRQMDYIYEDELKNYVDTGVLTDLVLAFSREGATKEYVQHKIAEKASYIWNLISQGGYLYVCGDAKGMARDVHRTLHNIIQEQESVDSTSAEATVKKLQTEGRYLRDVW*

Protein Length: 528

Fln nts: AAAAAGAGAGAGGGCCTTGGCTTTCCAACCTTACTTATGGGGTATTCGGTTTAGGCAACAGACAATATAAGCATTTCAATAAGGTTGCTTGCACAGTAGATGAAGCATTAAGTGAACAAGGTGGGAAACGGCTTGTTCCAGTGGGCCTTGGTGATGATGATCAGTGCATTGAAGATGACTTTACTGCTTGGCGAGAGCAGGTTTGGCCTGAGCTAGATCAGTTATTGCGTGACGAAGATGATCAACCCTCAAGTGCTACACCTTATACAGCAGCAATACCTCAGTACCGGGTAGAAATTCATGATTCTTCAGTTCCACTTTATGAGGAAACTAATGTAAAGCAGAATGGTCAAGCCATTTATGATATCCATCATCCTTGCAGAGCAAACGTAGCAGTGCGAAGAGAACTTCATACACCATTGTCTGACCGTTCTTGCATTCATTTGGAATTTGATATCACAGATACTGGCGTTACGTATGAGACCGGAGATCATGTTGGCGTCTATGCAGAAAACTTAGATGAAACTGTGGAGGAAGCTGCAAAGTTACTAGGCTACCCACTAGACACAATAATTTCAGTCCACAGTGACAATGAAGATGGTACGCCTCTTGCTGGGAGCTCCTTGCCACCACCCTTCCCTGGTCCATGCACTCTGCAGACTGCTCTTGCTCGTTTTGCAGATTTGTTGAATCCTCCTCGAAAGGCTGCCTTGGTTGCATTGGCTAGTCATGCATCTGATCCAGCTGAAGCTGAGAGGTTGAAGTTTCTTTCATCACCAGCCGGAAAGGATGAGTACTCCCAATGGATTACTGGGAGTCAAAGGAGTCTTTTAGAAGTAATGGCAGAATTTCCATCTGCAAAACCACCTCTCGGTGTCTTCTTTGCAGCAATTGCCCCACGTCTGCAACCTCGATATTACTCTATTTCTTCTTCTCCAAAGTTTTCACCCAATAGAATACATGTAACGTGTGCTCTGGTTTATGGGCCTAGTCCAACTGGCAGAATCCACAAAGGTGTTTGTTCCAATTGGATGAAGAATTCGGTGCCTTCTGAGGAAATCCTTGATTGTAGCTGGGCACCAGTCTTTGTTAGACAGTCAAATTTCAAATTGCCAGCAGATCCTTCAGTTCCTATTGTTATGGTGGGCCCTGGAACTGGTTTAGCACCTTTTAGAGGTTTTTTGCAGGAAAGAGCAGCACTTCAAGAATCTGGAGAGAAGCTCGGGCCAGCTGTTCTTTTCTTTGGGTGCAGGAATCGCCAGATGGACTACATTTATGAAGATGAACTGAAGAACTATGTGGATACTGGCGTATTGACTGATCTTGTTCTTGCTTTCTCTCGTGAAGGAGCAACCAAAGAGTATGTGCAGCACAAGATAGCAGAGAAGGCATCCTATATTTGGAATCTCATTTCTCAAGGTGGCTATCTCTATGTATGTGGTGATGCCAAGGGCATGGCTAGGGATGTGCACAGGACCCTACACAATATCATCCAGGAGCAGGAGTCGGTGGATAGCACCAGTGCAGAGGCTACAGTGAAGAAATTACAGACAGAAGGAAGATATTTACGAGATGTATGGTAA___TTGAGTGAATTTTGTTCTCGGTCAGTTCAATCTCATCTCGTGCAGAATTCGGTAAGAAGATTCAGGAAAAGAGAAAAGCCTAGCCAAGTATTTATTTGGGAAGAAATCTCCCGGTAAACTGATGCTCAAGTTGATTTCTCACAGAAGTGTGGGATCTTTACAACTCCAAATACTGCATTCCAGGATTTGCTATCACTGTGCCCTTTCGAATTTTCTAGCACCAGTATCACATTAGGACTGGTCTAGAATTGTATTCTTAATTCATTTGTCTAAGAGTTTAGTACAACAAAGCTAAATATCATGCCCTTCAGTTAGAAAACAACTCTCCACGTCATAGAATTTTTAATATATATCTTGGTATGATCTTTTAATACCATACTCGACCGTTCATAATCTACATGGAAAGCTGTCCCTTTCCAGTTTGATATTGTGTTTATCTTCCTTCTATAATGGCATATAAGACACAATACTGAATTGAAGCTTGCGGTGTCATGATA

Fln Alignment:

Contig8473___KERGPWLSNLTYGVFGLGNRQYKHFNKVACTVDEALSEQGGKRLVPVGLGDDDQCIEDDFTAWREQVWPXXXXXXXXXXXXPSSATPYTAAIPQYRVEIHDSSVPLYEETNVKQNGQAIYDIHHPCRANVAVRRELHTPLSDRSCIHLEFDITDTGVTYETGDHVGVYAENLDETVEEAAKLLGYPLDTIISVHSDNEDGTPLAGSSLPPPFPGPCTLQTALARFADLLNPPRKAALVALASHASDPAEAERLKFLSSPAGKDEYSQWITGSQRSLLEVMAEFPSAKPPLGVFFAAIAPRLQPRYYSISSSPKFSPNRIHVTCALVYGPSPTGRIHKGVCSNWMKNSVPSEEILDCSWAPVFVRQSNFKLPADPSVPIVMVGPGTGLAPFRGFLQERAALQESGEKLGPAVLFFGCRNRQMDYIYEDELKNYVDTGVLTDLVLAFSREGATKEYVQHKIAEKASYIWNLISQGGYLYVCGDAKGMARDVHRTLHNIIQEQESVDSTSAEATVKKLQTEGRYLRDVW
Q40916_________________KERGPWLSNLPYGVFGLGNRQYEHFNKVACTVDEALNEQGGKRLVPVGLGDDDQCIEDDFTAWREQVWPELDQLLRDEDDQPSSATPYTAAIPQYRVEIHDPPVPLYEETYATQNGQAFIDIHHPCRANVAVQRELHTPLSDRSCIHLEFDISGTGLTYETGDHVGVYAENLSDTVEEAAKLLGYPLDTIISVHSDKEDGTPLGGSSLLPPFPGPCTLQTALARYADLLNPPRKAALVALASHASDPAEAERLKFLSSPAGKDEYSQWITVSQRSLLEVMAEFPSAKPPLGVFFAAVAPRLQPRYYSISSSPRYASNRIHVTCALVYGPSPTGRIHKGVCSNWMKNSVPSEKSQYCSWAPVFVRQSNFKLPSDPSVPIVMVGPGTGLAPFRGFLQERAAIQKSGEKLGPAVLFFGCRNRQMDYIYEDELKSYVENGVLTELVLAFSREGATKEYVQHKITEKGSYIWNLIAQGGYLYVCGDAKGMARDVHRTLHSIVQEQESVDSTSAEATVKKLQTEGRYLRDVW

SNPs (tot: 67)

Position	A %	C %	G %	T %	Probability
151	16		83		0.994512
152	16		83		0.994512
230	14		85		0.993533
232			85	14	0.993533
315	16			83	0.994512
319		83		16	0.994512
373	18	81			0.999994
376		81	18		0.999994
477	10		90		0.90298
496			90	10	0.90298
520		12	87		0.992554
523			87	12	0.992554
562	11	88			0.923564
565		11	88		0.923564
566	88			11	0.923564
567	11	66		11	0.944822
569		88		11	0.923564
571	87			12	0.992554
771			11	88	0.923564
1001	11		88		0.999937
1004			88	11	0.999937
1005	88			11	0.999937
1177	11		88		0.923564
1178		11	88		0.923564
1179	11			88	0.923564
1191	90	10			0.90298
1193			90	10	0.90298
1194	90			10	0.90298
1201		88		11	0.923564
1223	12			87	0.992554
1225	12		87		0.992554
1226			87	12	0.992554
1227			87	12	0.992554
1239	40			60	1.0
1240		40		60	1.0
1241	40			60	1.0
1242		60		40	1.0
1321			88	11	0.923564
1523	13		86		0.999973
1568		10		90	0.90298
1570		90		10	0.90298
1571			90	10	0.90298
1581	11		88		0.923564
1582		11		88	0.923564
1584	88			11	0.923564
1587	25		75		1.0
1589			75	25	1.0
1705	16		83		0.994512
1708			83	16	0.994512
1833		11		88	0.923564
1834	11			88	0.923564
1835			88	11	0.923564
1842	12			87	0.992554
1843	87	12			0.992554
1865	14		85		0.993533
1901	80	20			0.995493
1903	80			20	0.995493
1904		80		20	0.995493
1949	16	83			0.994512
1950	16			83	0.994512
1952			16	83	0.994512
1999	20			80	0.995493
2004			80	20	0.995493
2036	25		75		0.996473
2041	75			25	0.996473
2050	33		66		0.997452
2051	66			33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain