SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene8450

Length: 238 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene8450
CTCGGAACTGGGTTGCAACATGCAAAGGTTGTTGATGTAGAGGACGTGGTTGAAATTGACCCCAACTTGGAGGAGGAACATGCAGAAGATGATGTCATAGCGAATGCACTGCAAAAGTGTGATCAAATAGCTGTGACATTGCGTGAGGATCTTTATGGCAGTGGGACATCTGCTAGTAGCACGTGCTGTGATAGATATGCAGAAGTGAATGCCAGTGCAGCAAGAATTGCAACACATT

Ace file of the UniGene biog3_v1.0_unigene8450 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene4238	3/3

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	58%
Blast2go	snf2 family dna-dependent atpase	-	-	7.98353e-28	58%

Source	GOs	Term	Type	e value	Identity
Blast2go	ATP binding	GO:0005524	Molecular Function	7.98353e-28	58%
Blast2go	helicase activity	GO:0004386	Molecular Function	7.98353e-28	58%
Blast2go	DNA binding	GO:0003677	Molecular Function	7.98353e-28	58%

Source	InterPros	Term	Type	Identity
Sma3	SNF2-related	IPR000330	-	-
Sma3	Helicase, C-terminal	IPR001650	-	-
Sma3	Helicase, superfamily 1/2, ATP-binding domain	IPR014001	-	-
Sma3		IPR014021	-	-
Sma3	Chaperonin Cpn60, conserved site	IPR018370	-	-
Sma3	Isocitrate lyase/phosphorylmutase, conserved site	IPR018523	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: D7TAI9

Fln msg: Distance to subject end: 568 aas, your sequence is shorter than subject: 79 - 728

Fln protein: LGTGLQHAKVVDVEDVVEIDPNLEEEHAEDDVIANALQKCDQIAVTLREDLYGSGTSASSTCCDRYAEVNASAARIATH

Protein Length: 80

Fln nts: CTCGGAACTGGGTTGCAACATGCAAAGGTTGTTGATGTAGAGGACGTGGTTGAAATTGACCCCAACTTGGAGGAGGAACATGCAGAAGATGATGTCATAGCGAATGCACTGCAAAAGTGTGATCAAATAGCTGTGACATTGCGTGAGGATCTTTATGGCAGTGGGACATCTGCTAGTAGCACGTGCTGTGATAGATATGCAGAAGTGAATGCCAGTGCAGCAAGAATTGCAACACATT

Fln Alignment:

Contig8450___EEEHAEDDVIANALQKCDQIAVTLREDLYGSGTSASSTCCDRYAEVNASAARIAT
D7TAI9_________________EEEVEEDDVVGKALQKCAKISAELRRELYGS----SVTACDRYAEVESSSVRIVT

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
49	33			66	0.997452
50		66		33	0.997452
51	66		33		0.997452
52		66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain