SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene8433

Length: 475 nt

UniGene Fasta

>biog3_v1.0_unigene8433
AATGTATTGGATCTTCACCTTGGCTGCTGTCAATATTGTATGAGAATATTAGGGAAGGTCTTGGTATCACTGGGATCATTCTTTGCGTGTTTGGGCTTCTGTACGGTGGGTTTTGGAGGATTCAGATGCGGAAGAGGTTTGGCTTACCTGGAAATGGCTGCTGTTGTGGGCAGCCCAATGTGACAGATCTAATGCAGTGGCTTTTCTGCGGTGTTTGTTCTCTCTGTCAGGAGGTTCGCACTGGAAATTTCTATGAGGTCGGCGAGGATAAACTCTATTCTAAAGAATATCTTGGCCAAGATTCACAAGACCTGAGAGATGCTTCACCGAGTTTGGCTCCGTTGGGTCATGAACCAGGATCACCAGCTTTGAATTCACCCTCTTGGGTCAAATCAGACTTGTCACGAAATTTGAATGCTCAAGCTTCAGTTGCGCCAGTTTTGAGTCCAATGCATTATTCCATTGAAAACACATT

Ace file of the UniGene biog3_v1.0_unigene8433

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene18618	4/4

Source	Descriptions	Term	Type	e value	Identity
AutoFact	PLAC8 domain containing protein	-	-	9.0e-12	20%
FL-Next	tr=Predicted protein; Hordeum vulgare var. distichum (Two-rowed barley).	-	-	0.0	52%
Blast2go	plac8 family protein	-	-	0.0	69%

Source	GOs	Term	Type	e value	Identity
Blast2go	protein binding	GO:0005515	Molecular Function	0.0	69%
Blast2go	plasma membrane	GO:0005886	Cellular Component	0.0	69%

Source	InterPros	Term	Type	Identity
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Uncharacterised protein family Cys-rich	IPR006461	-	-
Sma3	EGF-like region, conserved site	IPR013032	-	-
Sma3		IPR015706	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: F2DFZ0

Fln msg: Distance to subject end: 27 aas, your sequence is shorter than subject: 157 - 559

Fln protein: CIGSSPWLLSILYENIREGLGITGIILCVFGLLYGGFWRIQMRKRFGLPGNGCCCGQPNVTDLMQWLFCGVCSLCQEVRTGNFYEVGEDKLYSKEYLGQDSQDLRDASPSLAPLGHEPGSPALNSPSWVKSDLSRNLNAQASVAPVLSPMHYSIENT

Protein Length: 158

Fln nts: AATGTATTGGATCTTCACCTTGGCTGCTGTCAATATTGTATGAGAATATTAGGGAAGGTCTTGGTATCACTGGGATCATTCTTTGCGTGTTTGGGCTTCTGTACGGTGGGTTTTGGAGGATTCAGATGCGGAAGAGGTTTGGCTTACCTGGAAATGGCTGCTGTTGTGGGCAGCCCAATGTGACAGATCTAATGCAGTGGCTTTTCTGCGGTGTTTGTTCTCTCTGTCAGGAGGTTCGCACTGGAAATTTCTATGAGGTCGGCGAGGATAAACTCTATTCTAAAGAATATCTTGGCCAAGATTCACAAGACCTGAGAGATGCTTCACCGAGTTTGGCTCCGTTGGGTCATGAACCAGGATCACCAGCTTTGAATTCACCCTCTTGGGTCAAATCAGACTTGTCACGAAATTTGAATGCTCAAGCTTCAGTTGCGCCAGTTTTGAGTCCAATGCATTATTCCATTGAAAACACATT

Fln Alignment:

Contig8433___LSILYENIREGLGITGIILCVFGLLYGGFWRIQMRKRFGLPGNGCCCGQPNVTDLMQWLFCGVCSLCQEVRTGNFYEVGEDKLYSKEYLGQDSQDLRDASPSLAPLGHEPGSPALNS
F2DFZ0_________________VNINNETLREALGLTGIALCFFGLLYGGFWRIQMRKRFNLPGNPFCCRNPDVTDCFQWLFCCSCSLAQEVRTADYYDIAEERSYR-------GQVTEESQRVMSPLAREDGLPLFKS

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
448	33		66		0.997452
450		66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain