SustainPineDB

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Assembly info
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SSRs
Descriptions
GOs
ECs
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene8405

Length: 387 nt

UniGene Fasta

>biog3_v1.0_unigene8405
CTTCATTCCATAGGCTGGGCAGTCACTCATTGTGCAGTAATTCCTAATGATATTGATGCTATTTCTGAAGCAGTTGAACAGCAGATTCAAGTTAGTGACATGGTGTTTATCTTTGGCGGCGTTGGACCTATTCATTCAGATGTTTCGTTGGCTGGAGTTGCAAAAGCCTTTGGCGTGCGCTTGGCTCCTGATGAAGAATTTGAGGAATATTTGAGACAGTTCATAGGAGAAGAGTGCTCTGGTTTTTAGAATGAGATGGCTCGGCTACCTGAGGGTATCACAGAACTTCTGCACCATGATGAACTGCCTGTTCCATTGATCAAATGCCAGAACGTGATTGTTCTTTCTGCAACAACTGTTCCTGAGCTGGACCTGCAATGGAATTGC

Ace file of the UniGene biog3_v1.0_unigene8405

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene8104	4/4

Source	Descriptions	Term	Type	Identity
AutoFact	phosphoadenosine phosphosulfate (PAPS) reductase family protein [Arabidopsis thaliana] emb\|CAB83302.1\| putative protein [Arabidopsis thaliana] gb\|AED90602.1\| phosphoadenosine phosphosulfate (PAPS) reductase family protein [Arabidopsis thaliana]	-	-	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Blast2go	phosphoadenosine phosphosulfate reductase family protein	-	-	75%

Source	GOs	Term	Type	Identity
Blast2go	Mo-molybdopterin cofactor biosynthetic process	GO:0006777	Biological Process	75%
Blast2go	transferase activity	GO:0016740	Molecular Function	75%
Blast2go	mitochondrion	GO:0005739	Cellular Component	75%

Source	InterPros	Term	Type	Identity
Sma3	Molybdopterin binding	IPR001453	-	-
Sma3	Phosphoadenosine phosphosulphate reductase	IPR002500	-	-
Sma3	Rossmann-like alpha/beta/alpha sandwich fold	IPR014729	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5A925

Fln msg: Distance to subject end: 101 aas, your sequence is shorter than subject: 129 - 523

Fln protein: LHSIGWAVTHCAVIPNDIDAISEAVEQQIQVSDMVFIFGGVGPIHSDVSLAGVAKAFGVRLAPDEEFEEYLRQFIGEECSGF*NEMARLPEGITELLHHDELPVPLIKCQNVIVLSATTVPELDLQWNC

Protein Length: 130

Fln nts: CTTCATTCCATAGGCTGGGCAGTCACTCATTGTGCAGTAATTCCTAATGATATTGATGCTATTTCTGAAGCAGTTGAACAGCAGATTCAAGTTAGTGACATGGTGTTTATCTTTGGCGGCGTTGGACCTATTCATTCAGATGTTTCGTTGGCTGGAGTTGCAAAAGCCTTTGGCGTGCGCTTGGCTCCTGATGAAGAATTTGAGGAATATTTGAGACAGTTCATAGGAGAAGAGTGCTCTGGTTTTTAGAATGAGATGGCTCGGCTACCTGAGGGTATCACAGAACTTCTGCACCATGATGAACTGCCTGTTCCATTGATCAAATGCCAGAACGTGATTGTTCTTTCTGCAACAACTGTTCCTGAGCTGGACCTGCAATGGAATTGC

Fln Alignment:

Contig8405___LHSIGWAVTHCAVIPNDIDAISEAVEQQIQVSDMVFIFGGVGPIHSDVSLAGVAKAFGVRLAPDEEFEEYLRQFIGEECSGF*NEMARLPEGITELLHHDELPVPLIKCQNVIVLSATTVPELDLQWNC
D5A925_________________LHSIGWAVTHRAVIPNDIDAISEAVEQRIQVSDMVFIFGGVGPIHSDVSLAGVAKAFDVRLAPDEEFEEYLRQFIGEEYSGDQNEMARLPEGITELLHHNELPVPLIKCQNVIVLSATTVPELGLQWNC

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain