SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene8398

Length: 174 nt

UniGene Fasta

>biog3_v1.0_unigene8398
GGTTTTCCTGTCCTCCCAGAAGGACAGAAATTCTGTTCCTTGGTATGCAAGGCCTGGCACAGGGTTGAGGCGTGGACGCGCCAGCAGGTGTTCATTGGCAACTGTTATGCTGTCTCCCCACAGATTATGATAAAAGGTTTCCCAAGATCAAGTCTGTGTCACTCAAGGGACATT

Ace file of the UniGene biog3_v1.0_unigene8398

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene6244	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	TIR1/AFB auxin receptor protein PintaAFB4A n=2 Tax=Pinus taeda RepID=C9EHS9_PINTA	-	-	98%
FL-Next	tr=TIR1/AFB auxin receptor protein PintaAFB4A; Pinus taeda (Loblolly pine).	-	-	100%
Blast2go	f-box family protein	-	-	82%

Source	ECs	Term	Type	e value	Identity
Blast2go	Ubiquitin--protein ligase.	EC:6.3.2.19	-	0.0	82%

Source	GOs	Term	Type	Identity
Blast2go	auxin mediated signaling pathway	GO:0009734	Biological Process	82%
Blast2go	receptor activity	GO:0004872	Molecular Function	82%
Blast2go	protein binding	GO:0005515	Molecular Function	82%
Blast2go	ubiquitin-protein ligase activity	GO:0004842	Molecular Function	82%
Blast2go	inositol hexakisphosphate binding	GO:0000822	Molecular Function	82%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	F-box domain, cyclin-like	IPR001810	-	-
Sma3	NB-ARC	IPR002182	-	-
Sma3	Leucine-rich repeat 2	IPR013101	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C9EHS9

Fln msg: ERROR#3, very serious frame error, Overlapping hits, possible frame ERROR between 37 and 37, and overlapping frame ERROR between 147 and 132, Distance to subject end: 494 aas, your sequence is shorter than subject: 58 - 585

Fln protein: VFLSSQKDRNSxxLVCKAWHRVEAWTRQQVFIGNCYAVSPQIxxxxxxxxKSVSLKGH

Protein Length: 59

Fln nts: GGTTTTCCTGTCCTCCCAGAAGGACAGAAATTCTxxxxxxTTGGTATGCAAGGCCTGGCACAGGGTTGAGGCGTGGACGCGCCAGCAGGTGTTCATTGGCAACTGTTATGCTGTCTCCCCACAGATTATxxxxxxxxxxxxxxxxxxxxxCAAGTCTGTGTCACTCAAGGGACATT

Fln Alignment:

Contig8398___VFLSSQKDRNSVSLVCKAWHRVEAWTRQQVFIGNCYAVSPQIMIxxxxxIKSVSLKG
C9EHS9_________________VFLSSQKDRNSVSLVCKAWHRVEAWTRQQVFIGNCYAVSPQIMIxxxxxIKSVSLKG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain