SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene8382

Length: 1101 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene8382

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene3427	31/31

Source	Descriptions	Term	Type	Identity
AutoFact	galactokinase [Pisum sativum]	-	-	69%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Blast2go	galactose kinase	-	-	84%

Source	ECs	Term	Type	e value	Identity
Blast2go	Galactokinase.	EC:2.7.1.6	-	0.0	84%

Source	KEGGs	Term	Type	Identity
Blast2go	Galactose metabolism	00052		84%
Blast2go	Amino sugar and nucleotide sugar metabolism	00520		84%
Blast2go	Metabolic pathways	01100		84%
Blast2go	N-acetylgalactosamine kinase.	EC:2.7.1.157	-	84%

Source	GOs	Term	Type	Identity
Blast2go	carbohydrate phosphorylation	GO:0046835	Biological Process	84%
Blast2go	galactose metabolic process	GO:0006012	Biological Process	84%
Blast2go	ATP binding	GO:0005524	Molecular Function	84%
Blast2go	galactokinase activity	GO:0004335	Molecular Function	84%
Blast2go	N-acetylgalactosamine kinase activity	GO:0033858	Molecular Function	84%
Blast2go	cytoplasm	GO:0005737	Cellular Component	84%

Source	InterPros	Term	Type	Identity
Sma3	Galactokinase	IPR000705	-	-
Sma3	GHMP kinase, ATP-binding, conserved site	IPR006203	-	-
Sma3	GHMP kinase N-terminal domain	IPR006204	-	-
Sma3	Mevalonate/galactokinase	IPR006206	-	-
Sma3	Zinc finger, SWIM-type	IPR007527	-	-
Sma3	GHMP kinase, C-terminal domain	IPR013750	-	-
Sma3	Ribosomal protein S5 domain 2-type fold, subgroup	IPR014721	-	-
Sma3	UDP-3-O-acyl N-acetylglucosamine deacetylase, N-terminal	IPR015870	-	-
Sma3	HTH domain AraC-type, conserved site	IPR018062	-	-
Sma3	Galactokinase, conserved site	IPR019741	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A7V6

Fln msg: your sequence is longer than subject: 289 - 154

Fln protein: MDQAISIMAKPGFAELIDFNPIQATDVQLPSGGTFVIANSLAESQKAVTAATNYNNRVVECRLAAIVLAIKLGMEAKEAASNVKTLSDVEDMCVSFSNTRGSSDPLLAVEELLHEEPYTAEEIEKITEKSLLSIMTGSPSSLAVLAAATHFKLFQRASHVYSEAKRVHLFRETVISNLSDDDVLEKLGDLMNQSHKSCSTLYECSCPELEELVKVCQDSGAVGARLTGAGWGGCAVALVKDNIVPSFVLNLKEAFYRSRIERGLINHNDLGLYVFASKPSSGAAIFKF*

Protein Length: 290

Fln nts: GAAAGAAGTAGCACAGCTCACTTGTGAATGTGAACGTCATATTGGAACTCAATCAGGAGGG_-_ATGGATCAGGCAATTTCAATAATGGCAAAGCCAGGGTTTGCTGAATTGATAGACTTCAATCCAATTCAAGCAACTGATGTGCAGTTACCTTCTGGTGGAACATTTGTCATTGCAAACTCTCTTGCTGAATCACAGAAAGCAGTGACTGCAGCAACAAACTACAATAACAGAGTTGTAGAATGCCGTTTGGCTGCTATTGTTCTAGCTATAAAACTTGGAATGGAAGCAAAGGAGGCTGCTTCAAATGTTAAAACCCTTTCTGATGTTGAGGATATGTGTGTATCATTTTCCAATACTCGTGGTTCATCAGACCCACTCCTTGCTGTTGAGGAACTTTTACATGAAGAACCGTATACAGCAGAGGAGATTGAAAAAATCACTGAAAAAAGTCTCCTATCGATCATGACAGGCTCACCATCATCCTTGGCTGTACTTGCAGCTGCTACACATTTTAAATTATTCCAGAGAGCATCTCACGTTTACTCAGAAGCAAAACGGGTTCATTTATTTCGGGAAACTGTGATATCAAATCTAAGTGATGATGATGTATTGGAAAAGCTTGGGGACCTTATGAATCAGAGCCATAAGAGCTGCAGCACTTTATATGAATGCAGTTGTCCTGAATTGGAAGAGCTTGTAAAGGTTTGTCAAGATAGCGGAGCAGTTGGTGCGAGACTTACTGGAGCTGGATGGGGTGGTTGTGCAGTTGCTTTAGTGAAAGATAATATAGTCCCTTCTTTCGTCTTAAATTTAAAGGAAGCCTTCTATCGGTCACGAATTGAGAGGGGATTGATTAATCACAATGATTTAGGCCTCTATGTATTTGCCTCTAAACCATCAAGTGGTGCTGCAATTTTCAAATTTTAA___TCATCCCCCATGGATGGTTATAAATCCACTTTTGAGATTTCAGTGTTCTCTCGAGGTATTTCACTGTTAAATGAAGGCCAGAGGAGTCAAACTAATTGTGCAAACATATAAATGCCAATTCTTGTAGAAAAAGAAGTTGCAAGGAAATTGTTTGGTTCTGATTTTACGACATT

Fln Alignment:

Contig8382___MTGSPSSLAVLAAATHFKLFQRASHVYSEAKRVHLFRETVISNLSDDDVLEKLGDLMNQSHKSCSTLYECSCPELEELVKVCQDSGAVGARLTGAGWGGCAVALVKDNIVPSFVLNLKEAFYRSRIERGLINHNDLGLYVFASKPSSGAAIFKF
D5A7V6_________________MGGSPSSLAVLAAATHFKLFQRASHVYSEAKRVHLFRETVMSNLSDDDILEKLGELMNQSHKSCSTLYECSCPELEELVKVCRDSGALGARLTGAGWGGCAVALVKENIVPSFILNLKEAFYRSRIDRGLINHNDLGLYVFASKPSSGAAIFKF

SNPs (tot: 26)

Position	A %	C %	G %	T %	Probability
545		25	75		0.996473
546	25			75	0.996473
592	25		75		0.996473
607		25	75		0.996473
610			75	25	0.996473
751	12		87		0.992554
752		12	87		0.992554
755		87		12	0.992554
792		11		88	0.923564
794	88			11	0.923564
835	11			88	0.923564
838		88	11		0.923564
839			88	11	0.923564
915		22		77	0.999999
937	28			71	1.0
938		71		28	1.0
976	22			77	0.999999
979			77	22	0.999999
988		85		14	0.993533
1014	16	83			0.994512
1017			83	16	0.994512
1018	83			16	0.994512
1060	25			75	0.996473
1061		25		75	0.996473
1062	25		75		0.996473
1064	75			25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain